PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G036800.4
Common NamePOPTR_0014s03610g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 617aa    MW: 68796.5 Da    PI: 8.3754
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G036800.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.94.5e-1919109199
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         ff ++  s++l+s rl++p +f+++++gk+++   ++l  +sg +W+  l  ++  + +++++GW+eFv+++ L+ gD +vF+++g+ +f 
  Potri.014G036800.4  19 FFVIF--SSNLSSERLRIPVSFIKHMEGKTPG--LVSLLGPSGDVWTADL--TQENDDVLFSNGWSEFVRDHFLECGDLLVFRYHGELCF- 102
                         56666..99**************888888666..7***************..999999**************************999999. PP

                         .EEEEE-S CS
                  B3  92 lvvkvfrk 99 
                           v+vf++
  Potri.014G036800.4 103 -SVQVFDQ 109
                         .9999987 PP

2B343.26.9e-14268357294
                         EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         + ++++ +v+ s  l +p +f  +h   +++ ++++l++ +g  W+v+    ++   +++l +GW  Fv++n++++gD+++F+l+++   e
  Potri.014G036800.4 268 VRIMKRFNVSGSYTLNIPYQFSMAHL--PNCRTEIILRTIKGACWSVNSVPaTRVHTSHTLCGGWMAFVRSNDINVGDVCIFELVRK--YE 354
                         56667777888889*******98996..45889***************955677777899***********************9874..33 PP

                         .EE CS
                  B3  92 lvv 94 
                         l+v
  Potri.014G036800.4 355 LRV 357
                         344 PP

3B348.71.3e-15495584496
                         E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                  B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                         ++ + +v+ s  l +p +f +++   ++++++++l +++gr W+v+   + k+++ +++ +GW  Fv++n++k gD+++F+l+g+ +   +
  Potri.014G036800.4 495 IMRKFNVSGSYTLKIPHQFSAAYL--PNCKTEVILCNLQGRCWTVNSLPDSKGRAvHTFCGGWMAFVRDNNIKIGDICMFELVGKCQM--R 581
                         566667788889********9996..45899****************6655555579999**********************995444..5 PP

                         EEE CS
                  B3  94 vkv 96 
                         v++
  Potri.014G036800.4 582 VQI 584
                         555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.12E-2316112IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.3E-2316112IPR015300DNA-binding pseudobarrel domain
CDDcd100171.08E-1817108No hitNo description
PROSITE profilePS5086314.57917110IPR003340B3 DNA binding domain
SMARTSM010198.2E-1719110IPR003340B3 DNA binding domain
PfamPF023628.2E-1719109IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-20263361IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-22264364IPR015300DNA-binding pseudobarrel domain
CDDcd100171.19E-17265361No hitNo description
SMARTSM010191.9E-9267363IPR003340B3 DNA binding domain
PfamPF023621.3E-10267357IPR003340B3 DNA binding domain
PROSITE profilePS5086312.802267363IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.4E-23484585IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.3E-23485586IPR015300DNA-binding pseudobarrel domain
CDDcd100172.33E-18490584No hitNo description
PROSITE profilePS5086312.901492588IPR003340B3 DNA binding domain
SMARTSM010194.3E-14492588IPR003340B3 DNA binding domain
PfamPF023629.1E-13492583IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 617 aa     Download sequence    Send to blast
MTKENQSEKM VNVVRRPCFF VIFSSNLSSE RLRIPVSFIK HMEGKTPGLV SLLGPSGDVW  60
TADLTQENDD VLFSNGWSEF VRDHFLECGD LLVFRYHGEL CFSVQVFDQS ACEKEAAFHS  120
KCSQGCSEFC GSTGKKRERE EEAASLEKDF VCARKKVREG SSEFHSAYIE KNREAHISAC  180
DVGGCQHDGV LTTEESLSRQ TNQCGNPANC FATPSQSKAC SEKQEVPIWK RFGKDDDLKL  240
HDRGHMSIFS EREKRVAESF ISCFPYFVRI MKRFNVSGSY TLNIPYQFSM AHLPNCRTEI  300
ILRTIKGACW SVNSVPATRV HTSHTLCGGW MAFVRSNDIN VGDVCIFELV RKYELRVFIL  360
RVGKEGPDME TGKVVSNGEN TGCHAIAHKT ESFPKKSRRN CLKVHSKLIK KAEICDKKEF  420
EKSQATGILR HGNATKDSAS AVLFSMSQTG DGKKQAPIQN GKGVEAEAGL RRLVALDEER  480
AAKSFTSGFP NFVRIMRKFN VSGSYTLKIP HQFSAAYLPN CKTEVILCNL QGRCWTVNSL  540
PDSKGRAVHT FCGGWMAFVR DNNIKIGDIC MFELVGKCQM RVQISGVGHE VVNHQIGNPA  600
SNDLPLLAVP RNDPPS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G036800.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024441435.10.0B3 domain-containing protein Os01g0723500 isoform X2
TrEMBLA0A2K1XQ180.0A0A2K1XQ18_POPTR; Uncharacterized protein
STRINGPOPTR_0014s03610.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-21B3 family protein