PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G036600.1
Common NamePOPTR_0014s03590g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Dof
Protein Properties Length: 262aa    MW: 27530.2 Da    PI: 6.3803
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G036600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof118.82.1e-372786362
              zf-Dof  3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                        ++ l+cprC+st tkfCyynny+lsqPr+fCk+CrryWt+GG+lr+vPvGgg+rkn k+s
  Potri.014G036600.1 27 TEPLPCPRCNSTTTKFCYYNNYNLSQPRHFCKSCRRYWTQGGTLRDVPVGGGTRKNSKRS 86
                        67899***************************************************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074788.0E-242878IPR003851Zinc finger, Dof-type
PfamPF027011.6E-322984IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.0593084IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103268IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MPTEISQGHP TEAQNTMGAT HQPPKTTEPL PCPRCNSTTT KFCYYNNYNL SQPRHFCKSC  60
RRYWTQGGTL RDVPVGGGTR KNSKRSRSTS NNSSSISTSS SNSTSSNSAT LTAFTTTHEP  120
ESMPVVLSST TDSGLAAVKT EVPAGLNLND GLPSEDGNFI SLMNSNDQHG FTGLGGYGYA  180
SGFGFGPSEM GIGFGGRGSW SCPVMENVLV NGGTSGCHPW QLDCDHVEGG GLQAGFTADT  240
ENYFGSWPDL VMSAPAGKGL N*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.79670.0stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00189DAPTransfer from AT1G47655Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G036600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006375014.10.0dof zinc finger protein DOF1.6
TrEMBLB9MVJ00.0B9MVJ0_POPTR; Uncharacterized protein
STRINGPOPTR_0014s03590.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28013168
Representative plantOGRP3817445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G47655.12e-37Dof family protein