PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G025800.1
Common NamePOPTR_0014s02590g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 311aa    MW: 33741.6 Da    PI: 5.3851
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G025800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH505.3e-16127173455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          hn  E+rRR+riN+++  L+ l+P++      K +Ka++L +A+eY+k+Lq
  Potri.014G025800.1 127 VHNLSEKRRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 173
                         6*************************7.....5******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.5E-20120183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-20120183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.86123172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.84E-18126177No hitNo description
PfamPF000101.8E-13127173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-18129178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MEDLYGAAAA TEPEEISTFL HQLLHNNSSS PSKFMHHALS TPVENGVELL DRHRFSETEC  60
GAGVNFSDPD GYYAKEGVGN AVVSKRGGVS VEDDLGDFSC DSEKGVEVQA NTARPRSSSK  120
RSRAAEVHNL SEKRRRSRIN EKMKALQNLI PNSNKTDKAS MLDEAIEYLK QLQLQVQMLT  180
MRNGLSLHPM CLPGALQPMQ LPLSGMSFDE GIGLLTTNTL TGIFSANEES SEQNSLNLPT  240
QCTISNQPIT IPSGTNITSS ETNFGFEPQI HVNHAPFNLS TSSKEICREG TPQAKLEMNQ  300
TTKTSPSGVA *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006374908.10.0basic helix-loop-helix family protein
SwissprotQ9FUA43e-45SPT_ARATH; Transcription factor SPATULA
TrEMBLB9MVT50.0B9MVT5_POPTR; Basic helix-loop-helix family protein
STRINGPOPTR_0014s02590.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP25816128
FabidsOGEF22763379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.15e-43bHLH family protein