PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G017400.1
Common NamePOPTR_0014s01770g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family LBD
Protein Properties Length: 209aa    MW: 22465.4 Da    PI: 7.3401
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G017400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26096.72.4e-302105199
              DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                         +C++C+vlr++C++ Cvl+ ++     p++q +++ +++k+FG+s +++l++a+pe++r+ +++sl++eA+ r+ +Pv+Gavg++++++++
  Potri.014G017400.1   2 SCNGCRVLRKGCSETCVLRSCLhwiptPEAQGNATLFLAKFFGRSDLISLISAVPESQRPVLFQSLLFEACGRTVNPVNGAVGLLWSGNWH 92 
                         6************************9999************************************************************** PP

              DUF260  87 leqlkaelallke 99 
                         ++q+++e +l++e
  Potri.014G017400.1  93 VCQAAVESVLAGE 105
                         ******9998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.5321107IPR004883Lateral organ boundaries, LOB
PfamPF031951.4E-252102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSETCVLR SCLHWIPTPE AQGNATLFLA KFFGRSDLIS LISAVPESQR  60
PVLFQSLLFE ACGRTVNPVN GAVGLLWSGN WHVCQAAVES VLAGETLRPL PGILTGVLAP  120
NCDESSDSFS AAAYAVHSMT WNQSKPFDKE NNNQVVSDHH VNLCLARGRG GRDKRGRDAV  180
SFYTGGESET TSFESSGADK NKLLNLFV*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G017400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002320036.11e-154LOB domain-containing protein 39
SwissprotQ9SN233e-62LBD38_ARATH; LOB domain-containing protein 38
TrEMBLB9IBU31e-152B9IBU3_POPTR; LBD family protein
STRINGPOPTR_0014s01770.11e-153(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72134136
Representative plantOGRP4031699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.11e-64LOB domain-containing protein 38