PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G008100.1
Common NamePOPTR_0014s01260g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family AP2
Protein Properties Length: 550aa    MW: 61150.1 Da    PI: 7.4822
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G008100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.55.2e-16193252155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV++++++gr++A+++d  ++  g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Potri.014G008100.1 193 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqsRKgRTVYLGGYDMEEKAARAYDLAALKYWG 252
                         78*******************988886678446*************************98 PP

2AP245.61.8e-14297346355
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Potri.014G008100.1 297 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 346
                         9***************988532...5************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.37E-16193262IPR016177DNA-binding domain
CDDcd000184.18E-21193260No hitNo description
PfamPF008473.6E-13193252IPR001471AP2/ERF domain
SMARTSM003809.5E-28194266IPR001471AP2/ERF domain
PROSITE profilePS5103218.887194260IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.9E-16194261IPR001471AP2/ERF domain
PRINTSPR003674.3E-6195206IPR001471AP2/ERF domain
CDDcd000181.53E-24295353No hitNo description
SuperFamilySSF541712.09E-17295354IPR016177DNA-binding domain
SMARTSM003808.7E-33296360IPR001471AP2/ERF domain
PROSITE profilePS5103218.966296354IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-18296353IPR001471AP2/ERF domain
PfamPF008478.4E-10297346IPR001471AP2/ERF domain
PRINTSPR003674.3E-6336356IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MALSLDSSPS MYYHQDPDHE PNNQNCLNHL QQNPRQQQQQ QHQHIQVQHY PCYSNFRNNE  60
MLVGEDAKQM AQASDCSLKL PNMGDDGITG MKNWVSRNYQ GNHAMEQKML RCMVENGGES  120
GPNISAMAYG DLQCLSLSMS PGSQSSCVTG SLQVSPSVND CAAMETKKRG PGKVDQKQIV  180
HRKSIDTFGQ RTSQYRGVTR HRWTGRYEAH LWDNSCKKEG QSRKGRTVYL GGYDMEEKAA  240
RAYDLAALKY WGPSTHINFP LENYQNEIEE MKNMTRQEYV AHLRRKSSGF SRGASMYRGV  300
TRHHQHGRWQ ARIGRVAGNK DLYLGTFSTQ EEAAEAYDVA AIKFRGVNAV TNFVITRYDV  360
ERIMASSTLL AGELARRNKD IGPCDDASTN HSIPSTHNSN GESLPSQNCE NESDWKMVLY  420
QSSQQQLDHK ASNVMDNYKT QAFLLSPENV IGIDCMSSVH QHEFEDSSKM GAHMSNASSL  480
VTSLSSSREG SPDRASLPML FGMPPSAASK LFTSPNGDVS SWIPSAAAAQ LRPAVSLPHA  540
PVFAAWTDA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.55530.0bud
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed at the base of the stem. Expressed in stems. Expressed a low levels in crown roots and seeds (PubMed:21807632). Expressed in the stem region where adventitious (crown) root initiation occurs (PubMed:21481033). {ECO:0000269|PubMed:21481033, ECO:0000269|PubMed:21807632}.
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G008100.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2105550.0AC210555.1 Populus trichocarpa clone POP104-J03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024440363.10.0AP2-like ethylene-responsive transcription factor ANT
SwissprotQ84Z021e-150CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A2K1XNJ70.0A0A2K1XNJ7_POPTR; Uncharacterized protein
STRINGPOPTR_0014s01260.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91634114
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-136AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]