PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.013G108900.1
Common NamePOPTR_0013s11330g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ZF-HD
Protein Properties Length: 282aa    MW: 31735.6 Da    PI: 7.8916
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.013G108900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer100.11.5e-3149105259
         ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                         + v+YkeC++NhAas+Ggha DGCgEfmp  g++gt + l+CaACgCHRnFHRre+++
  Potri.013G108900.1  49 NVVKYKECMRNHAASIGGHANDGCGEFMPR-GDDGTRDWLTCAACGCHRNFHRRESST 105
                         5799*************************9.999********************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257745.0E-1851105IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.3E-2951103IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.5E-2752102IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.5453102IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.602.2E-30186254IPR009057Homeodomain-like
SuperFamilySSF466891.47E-19186254IPR009057Homeodomain-like
TIGRFAMsTIGR015651.5E-26194250IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MDLSVVPYQQ QHHHKSETVH DQDVDIVLHT KPITTMISNP KATKDPCKNV VKYKECMRNH  60
AASIGGHAND GCGEFMPRGD DGTRDWLTCA ACGCHRNFHR RESSTKRQHQ QQLLLSPPPL  120
QPQQFLLYGA PTTKNMNPVH DFMSRPHDED DDDDGLDDLD NDRRSETPER GEVNVVGSGG  180
KGFMVKSTSG SSNKRFRTKF TQEQKERMLE FAEKIGWRIQ KHDDMALNQF CNEVGIKRNV  240
LKVWMHNNKN AHRRRDGVPP VSAEAPPPPL PPSAPPQPVG V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A9e-281922511675ZF-HD homeobox family protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.66370.0bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.013G108900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006376248.10.0zinc-finger homeodomain protein 2
TrEMBLU5FSR80.0U5FSR8_POPTR; Uncharacterized protein
STRINGPOPTR_0013s11330.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF150921014
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.11e-53homeobox protein 22