PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.013G042600.1
Common NamePOPTR_0013s03990g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 355aa    MW: 40080 Da    PI: 10.3156
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.013G042600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.78.7e-32287344359
                         -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ edp+++++tYegeHnh+
  Potri.013G042600.1 287 DEYSWRKYGQKPIKGSPHPRGYYKCSSLrGCPARKHVERCLEDPSMLIVTYEGEHNHS 344
                         9*************************998****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.0E-18238283IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.803.6E-34273344IPR003657WRKY domain
PROSITE profilePS5081129.964280346IPR003657WRKY domain
SuperFamilySSF1182902.75E-27283344IPR003657WRKY domain
SMARTSM007747.7E-39285345IPR003657WRKY domain
PfamPF031063.1E-27287343IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MEEVEEVHKA AIESCNRVIG LLCQQKDQVQ GRNLMVETRE TVFKFKRVIS LLSTGLGHGR  60
VRKMKKLRPS LPQNIFLDSP NCKTVLSPKP LQMVPPNFLE TPLTDMDAKS KPSIQISQKM  120
LLENPVLELN SNIRPPVQIM QTKPPQNFQL PQQHQQIQRM HFQQQQQQMK YQADRVYSRS  180
NGGINLKFDG STCTPTMSST RSFISSLSMD GAVSTFDGDS FHLIGMPHSS DHISQQTRRR  240
CSGRGEDGNA KCSSSGKCHC SKRRKLRVKR SIKVPAISNK VADIPPDEYS WRKYGQKPIK  300
GSPHPRGYYK CSSLRGCPAR KHVERCLEDP SMLIVTYEGE HNHSRLISSQ SAHT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-202833431271WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3774450.0GQ377445.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 25 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002319082.20.0WRKY transcription factor 39 family protein
SwissprotQ9SR071e-128WRK39_ARATH; Probable WRKY transcription factor 39
TrEMBLB9I5G90.0B9I5G9_POPTR; WRKY transcription factor 39 family protein
STRINGPOPTR_0013s03990.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP18171541
FabidsOGEF26373479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04670.11e-115WRKY DNA-binding protein 39