PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.013G038300.1
Common NamePOPTR_0013s03580g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family CPP
Protein Properties Length: 214aa    MW: 23740.5 Da    PI: 4.7461
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.013G038300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR27.18.5e-098341440
                 TCR 14 lkkYCeCfaagkkCseeCkCedCkNke 40
                        l  YCeCfaag +C e C+C dC+N+ 
  Potri.013G038300.1  8 LYSYCECFAAGLYCIEPCSCLDCFNNP 34
                        568**********************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163413.329189IPR005172CRC domain
SMARTSM011144.8E-4336IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.7E-5833IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MFTRSCYLYS YCECFAAGLY CIEPCSCLDC FNNPGHEGTV LETRGQIESR NPLAFAPKVI  60
RNLDSASEFR GGVGCSSYCR CEGCKNTFGC KSGVEEDDLK WEESKIHEDA SDLNLLDIIE  120
KGEDHPDLMP PSQNSRTDFF YHQPKYEKHL KVIPEDETPE ILNSNCSPTS EVKSVSPNCP  180
RVSPPHHGFG SSASWMILRS LNPSPSLNPS SEQ*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed at the first stage of pollen development in uninucleate microspores and bicellular pollen but not in tricellular and mature pollen. {ECO:0000269|PubMed:18057042}.
UniprotTISSUE SPECIFICITY: Ubiquitous but expressed mostly in flowers with highest levels in developing ovules and microspores. {ECO:0000269|PubMed:10769244, ECO:0000269|PubMed:10769245, ECO:0000269|PubMed:18057042}.
Functional Description ? help Back to Top
Source Description
UniProtProbable floral-specific cell division component, required for proper organ formation in flowers. Regulates the floral meristem cell division and the inflorescence meristem organization. Plays a role in development of both male and female reproductive tissues. {ECO:0000269|PubMed:10769244, ECO:0000269|PubMed:10769245, ECO:0000269|PubMed:9043081, ECO:0000269|PubMed:9725857}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.013G038300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2175901e-129AC217590.1 Populus trichocarpa clone POP067-L23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024456351.11e-105protein tesmin/TSO1-like CXC 2 isoform X1
SwissprotQ9LUI37e-43TSO1_ARATH; CRC domain-containing protein TSO1
TrEMBLA0A2K2ABV51e-104A0A2K2ABV5_POPTR; Uncharacterized protein
STRINGPOPTR_0013s03580.11e-157(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9931755
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.18e-43Tesmin/TSO1-like CXC domain-containing protein
Publications ? help Back to Top
  1. Lu T,Dou Y,Zhang C
    Fuzzy clustering of CPP family in plants with evolution and interaction analyses.
    BMC Bioinformatics, 2013. 14 Suppl 13: p. S10
    [PMID:24268301]
  2. Xie W, et al.
    Exploring potential new floral organ morphogenesis genes of Arabidopsis thaliana using systems biology approach.
    Front Plant Sci, 2015. 6: p. 829
    [PMID:26528302]
  3. Wang W,Sijacic P,Xu P,Lian H,Liu Z
    Arabidopsis TSO1 and MYB3R1 form a regulatory module to coordinate cell proliferation with differentiation in shoot and root.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(13): p. E3045-E3054
    [PMID:29535223]