PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.013G025000.1
Common NamePOPTR_0013s02580g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NF-YC
Protein Properties Length: 237aa    MW: 26720.2 Da    PI: 6.0785
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.013G025000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC171.21.1e-53561592102
               NF-YC   2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdif 89 
                          +sfw++q   i+k+tdfknh+lPlarikki+kadedvkmisaeaPv++++ace+fileltl+sw+h+eenkrrtl+k+diaaa+trtdif
  Potri.013G025000.1  56 RQSFWTNQykeIDKVTDFKNHSLPLARIKKIMKADEDVKMISAEAPVIFARACEMFILELTLQSWNHTEENKRRTLQKNDIAAAITRTDIF 146
                         589****999999****************************************************************************** PP

               NF-YC  90 dflvdivprdelk 102
                         dflvdivpr+++k
  Potri.013G025000.1 147 DFLVDIVPREDMK 159
                         *********9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471133.71E-3345149IPR009072Histone-fold
PfamPF008083.9E-2177140IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.3E-3778155IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MDQQGYGTNP YQPNQMPAAS NPGSVPGQPA GAQLEQHQLA YQQIHQQQQQ QLQQQRQSFW  60
TNQYKEIDKV TDFKNHSLPL ARIKKIMKAD EDVKMISAEA PVIFARACEM FILELTLQSW  120
NHTEENKRRT LQKNDIAAAI TRTDIFDFLV DIVPREDMKD EVLASIPRGT MPVGGPVDAL  180
PYCYMPHPHA PQVGTPGMIM GKPVTDPAMY AQQSHPYMAQ HMWPQGPEQQ QSPSDQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4csr_B1e-4070155994NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
4awl_C1e-4070155994NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
1n1j_B1e-40701551297NF-YC
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127133RRTLQKN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.178820.0bud
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002319553.11e-177HEME ACTIVATED protein 5C
SwissprotQ8L4B22e-89NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
TrEMBLB9I7X71e-177B9I7X7_POPTR; HEME ACTIVATED protein 5C
STRINGPOPTR_0013s02580.11e-176(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP31517117
FabidsOGEF125734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.42e-86nuclear factor Y, subunit C9