PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.013G020500.1
Common NamePOPTR_0013s02120g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 1123aa    MW: 125548 Da    PI: 9.7503
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.013G020500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding249e-084682341
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41
                         W++ + +++++a + +G + Wk++a+++  +R+ +++ 
  Potri.013G020500.1 46 QWSKADLQRFYKAYRDHGQN-WKKVAAEVR-NRSVEMVE 82
                        6*****************88.*********.***99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.00184391IPR001005SANT/Myb domain
SuperFamilySSF466898.16E-84390IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.5E-44684IPR009057Homeodomain-like
PfamPF002492.0E-64685IPR001005SANT/Myb domain
CDDcd001677.55E-54781No hitNo description
PfamPF065842.0E-32616716IPR033471DIRP domain
SMARTSM011352.4E-58616717IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1123 aa     Download sequence    Send to blast
MAPTRKKSVN KRFLNEVSPE KEVKSSSKNK QQANGKKKLS DKLGTQWSKA DLQRFYKAYR  60
DHGQNWKKVA AEVRNRSVEM VETLYNMNRA YLSLPEGTAS VVGLIAMMTD HYSVLEASES  120
ERESNEVPGV LRKLQKRKQP KVQLSASKED LQQSHMVAST DGCLSFLKIG YGRPLHSVGK  180
RTPRFPVSHQ LKKDENYVSP KKKHRKSEIN ADDNDDEHVA ALTLTETLQR GDSAQVPQTP  240
HRRTEHMKSS PVQSWDKMPE SSPENLCDAS IYEHWSESGT GRGGPDLAYV RDASSLAEME  300
GIGTVEVHRK GKKFYGKKVR VEKIGNSQSD GGGEACSGTE EEQKVRTLKG KVEIEMSNAK  360
IDETSCRGQR KRSKKLFSDD KHDDFIGLQT LALVSAMEFE SSAQLDEERT AQTEDDKCSV  420
PESASTSHHR ERTKLSRQKE KAISGVDRIT SRKSKLGRYP PISAKPVSEA NKQPQSSSNG  480
TLKRKREALV SKVLDEEEIT PVVKGRHSGQ ISSPSKQLNS LELPEGSSFS GDQKNVPNDL  540
ATAQVPVASQ VILPTRKGSR RKMDLKRAMI PKVGKSSVNI RKNQINRQDG AIHLKDKLSC  600
SLSSPMVRRW CTFEWFYSAV DYPWFAKREF VEYLNHVGLG HIPRLTRVEW GVIRSSLGRP  660
RRFSERFLHE EREKLQQYRE SVRKHYMELR MGLREGLPTD LARPLSVGQR VIAIHPKTRE  720
LHDGGVLTVD HDQCRVQFDR AELGVEFVKD IDCMPSNPLD NMPEALRRQR ISVLPRELLV  780
NGKSNAGVFT ASEHLRSALS PKNALVKQAQ VEVNCAIPLA KGVSTDIVNV QGVCRQPSMV  840
AQIQAKESDI QALSELNRAL DRKEAWLMEL KNTNNDIMEN PKNGDNYLKY SEPLKNLAAV  900
LASSALLHLR QHNTYPINNL PGWLKPPANS CFSGMPRPHT SSFVSQESGS AVLEIVRGSR  960
LKAHNMVDVA VQAISSMKEG EDTFVRIGEA LDSMDRRHLG SEYRVQMIRA PEGVSGGLRL  1020
QNQLILSTSE PQVNSNASRP QSNDSDKTET VIPSDLISSC VAALLMIQTC SERQYPPSDV  1080
AQIIDSAVTS LQPCCPQNLP IYREIQMCMG RIKTQILALI PT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131138RKLQKRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.013G020500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1840861e-122AC184086.2 Populus trichocarpa clone Pop1-58C2, complete sequence.
GenBankAC2146881e-122AC214688.1 Populus trichocarpa clone ACSB193-J04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002319534.30.0protein ALWAYS EARLY 2 isoform X1
TrEMBLA0A2K1XZN10.0A0A2K1XZN1_POPTR; Uncharacterized protein
STRINGPOPTR_0013s02120.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17833369
Representative plantOGRP24791321
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.20.0DNA binding