PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.013G019200.2
Common NamePOPTR_0013s01990g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 438aa    MW: 47891.8 Da    PI: 9.1996
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.013G019200.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.2e-05628123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C++C+k F r  nL+ H r H
  Potri.013G019200.2  6 FVCEICNKGFQRDQNLQLHRRGH 28
                        89*******************88 PP

2zf-C2H214.20.0001382104123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC +C+k +  +s+ k H +t+
  Potri.013G019200.2  82 WKCDKCSKKYAVQSDWKAHVKTC 104
                         58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.4E-5528IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.92E-7528No hitNo description
PROSITE profilePS5015710.949628IPR007087Zinc finger, C2H2
PfamPF121716.8E-5628IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.017628IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SMARTSM003552204777IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.6E-570103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.92E-777102No hitNo description
SMARTSM003559082102IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLKQRTTA EIRKRVYVCP EPSCVHHNPA  60
RALGDLTGIK KHFCRKHGEK KWKCDKCSKK YAVQSDWKAH VKTCGTKEYK CDCGTIFSRR  120
DSFITHRAFC DALAEENTKA NQGLMPNMEP NLQGQVSNLI PSMAINNNPN QSTMMSSFNH  180
LDAKNPLSLP QELMPTPPKP SSGSMFSNGT TGLFGGSRSM SPSLQLNANS STIFEGNGLH  240
NLSGSASMSA TALLQKAAQM GATASSNNVS SPMMQKSFVT SMAPPTFGTM HTQNDQSHVI  300
GGDDGYANQF FSANGGVENS VLNDMGIFSA VLDQNNSLFK TMEHASSNNE NVFQGANSNP  360
GLSSPTSGAN PSGLSRFSTG DVMTVDFLGL GGSRQRNLHQ QHNHQEMEFT RGISHPRMQG  420
LNHFEQATAL KKPMWDV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-3378139364Zinc finger protein JACKDAW
5b3h_F1e-3378139364Zinc finger protein JACKDAW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.83620.0bud| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Observed in vegetative tissues. Mainly expressed in hypocotyls, petioles, shoot apices, root tips, and trichomes, and, at low levels, in leaves, stems and flowers. {ECO:0000269|PubMed:25035403}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.013G019200.2
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1468250.0EF146825.1 Populus trichocarpa clone WS01214_I21 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024439761.10.0protein indeterminate-domain 2
SwissprotQ9SCQ61e-102IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A2I4KKG80.0A0A2I4KKG8_POPTR; C2H2 family protein
STRINGPOPTR_0013s01990.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-93indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Ralph SG, et al.
    Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding.
    BMC Genomics, 2008. 9: p. 57
    [PMID:18230180]
  2. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  3. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  4. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]