PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.013G019200.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 508aa    MW: 54768.3 Da    PI: 9.0392
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.013G019200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-057698123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C++C+k F r  nL+ H r H
  Potri.013G019200.1 76 FVCEICNKGFQRDQNLQLHRRGH 98
                        89*******************88 PP

2zf-C2H213.90.00016152174123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC +C+k +  +s+ k H +t+
  Potri.013G019200.1 152 WKCDKCSKKYAVQSDWKAHVKTC 174
                         58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.99E-77598No hitNo description
Gene3DG3DSA:3.30.160.601.7E-57598IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.9497698IPR007087Zinc finger, C2H2
SMARTSM003550.0177698IPR015880Zinc finger, C2H2-like
PfamPF121718.1E-57698IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002807898IPR007087Zinc finger, C2H2
SMARTSM00355220117147IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.2E-4140173IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.99E-7147172No hitNo description
SMARTSM0035590152172IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MSNTTGDGTG SFSSGGTGGD EVHLNSSAAA AAANSNGSTI TQQPPLKRKR NLPGNPDPSA  60
EVIALSPNTL MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLKQRTTA EIRKRVYVCP  120
EPSCVHHNPA RALGDLTGIK KHFCRKHGEK KWKCDKCSKK YAVQSDWKAH VKTCGTKEYK  180
CDCGTIFSRR DSFITHRAFC DALAEENTKA NQGLMPNMEP NLQGQVSNLI PSMAINNNPN  240
QSTMMSSFNH LDAKNPLSLP QELMPTPPKP SSGSMFSNGT TGLFGGSRSM SPSLQLNANS  300
STIFEGNGLH NLSGSASMSA TALLQKAAQM GATASSNNVS SPMMQKSFVT SMAPPTFGTM  360
HTQNDQSHVI GGDDGYANQF FSANGGVENS VLNDMGIFSA VLDQNNSLFK TMEHASSNNE  420
NVFQGANSNP GLSSPTSGAN PSGLSRFSTG DVMTVDFLGL GGSRQRNLHQ QHNHQEMEFT  480
RGISHPRMQG LNHFEQATAL KKPMWDV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-33148209364Zinc finger protein JACKDAW
5b3h_F2e-33148209364Zinc finger protein JACKDAW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.83620.0bud| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Observed in vegetative tissues. Mainly expressed in hypocotyls, petioles, shoot apices, root tips, and trichomes, and, at low levels, in leaves, stems and flowers. {ECO:0000269|PubMed:25035403}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.013G019200.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1468250.0EF146825.1 Populus trichocarpa clone WS01214_I21 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024439761.10.0protein indeterminate-domain 2
SwissprotQ9SCQ61e-119IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A2I4KKG80.0A0A2I4KKG8_POPTR; C2H2 family protein
STRINGPOPTR_0013s01990.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21923085
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-108indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]