PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.013G018100.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family M-type_MADS
Protein Properties Length: 232aa    MW: 26622.6 Da    PI: 9.7453
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.013G018100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.41.7e-171151343
                        --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
              SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                        i n+s r+ tf kR++g++KK +ELS+LC++e++ ii s+ 
  Potri.013G018100.1 11 ITNDSARKATFKKRKKGLMKKVSELSTLCGIEACAIICSPY 51
                        89************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.848149IPR002100Transcription factor, MADS-box
SMARTSM004327.6E-25160IPR002100Transcription factor, MADS-box
CDDcd002661.26E-22285No hitNo description
SuperFamilySSF554558.76E-26295IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-8323IPR002100Transcription factor, MADS-box
PfamPF003194.7E-181151IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-82338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MTRKKVKLAY ITNDSARKAT FKKRKKGLMK KVSELSTLCG IEACAIICSP YDTQPEVWPS  60
PLGVQRVLSQ FQRLPEMEQC KKMVNQESFL RQRITKANEH LKKQRKDNRE KEVTHAMFQC  120
LTGKSLQNLN LMDLNDLGWM VDRNLKEINK RSDSLKNVTN SQMAAGPSGE HPSQRAEVPV  180
FEVNNDNMQR QQWFMDLLTP QEPLGFGGSD EMMLPFVDNN QNPPWSNTFF P*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLAYITNDSARKATFKKRK
22125KKRKK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the central cell of the female gametophyte and in early endosperm. Also detected in ovaries, young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269|PubMed:16798889}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.013G018100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2128440.0AC212844.1 Populus trichocarpa clone POP021-P07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024438774.11e-174agamous-like MADS-box protein AGL80
SwissprotQ9FJK32e-66AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A2K1XZK61e-172A0A2K1XZK6_POPTR; Uncharacterized protein
STRINGPOPTR_0013s01880.11e-112(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Representative plantOGRP11413173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.19e-61AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]