PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.012G143200.2
Common NamePOPTR_0012s13010g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 687aa    MW: 76642.5 Da    PI: 7.1587
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.012G143200.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.000917798223
                        EETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                        kC++C++ F ++ n++rH+r+H
  Potri.012G143200.2 77 KCSKCSREFCSSINYRRHLRVH 98
                        7********************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.34676103IPR007087Zinc finger, C2H2
PROSITE patternPS0002807899IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 687 aa     Download sequence    Send to blast
MPVVKPVSSI IDVMRPAEGN ESSLDTFIRD AIGKQPLLSI SRPNDNPVQW IQLLHALDQP  60
DYPGWPLLTP LKAQMQKCSK CSREFCSSIN YRRHLRVHHR LKRLDKDSAK NRDLLGAFWD  120
KLSEDEAKEI LSFKDVTFEE VPGSSIIRSL MTVIRKPGIS SLTQSCWRAG SDLLDLVQGR  180
PSRFPLSSGQ LFSTLDDASE NTFLCGTAVL IQKYIFDGGA GKIGLETKNI VACTSFVVEQ  240
KLINAWLADQ DAEALRCQKL LVEEEEAAQR RQVELLERKR QKKLRLKEQK EKEQRLDDKV  300
DDKECIEDTL EAVPQAEQSC PLAISDSDTL GSEILPDDVP SSLEPLQLPR TDEDFDLENQ  360
MGCGGGRSML QGKSHMHIVV ARWHGPLKSQ RNHLSYGFHA NQNSHAPKPG TIQKHGNLRD  420
FKPGPVMNGN RKWSRKPKPE YNGESLKARV QKEVVTVLDH DKKGEVLIGS ISVTLGDCSH  480
DEGNNLDGAR ADYLVEHEIL KKKNVQEKHN RPDSVQCGTN RSTVKLWRPV SRNGSKDLML  540
VENGSRECQH DNIDGKGEDQ NFNDSSPRSC AMDNTFGGME NGSLPGGLLP GVLQFTSHEA  600
RAFLAERWKE AIAAEHVKLA LSPDYQIATN HSSDTSKHND ISSAENQLFN VEAQESSTSG  660
AGRAKYKTKP DNGVKLKYIP KQRTII*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1276283ERKRQKKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.012G143200.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006377062.20.0uncharacterized protein LOC18103947
TrEMBLA0A2K1YDH30.0A0A2K1YDH3_POPTR; Uncharacterized protein
STRINGPOPTR_0012s13010.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25610.11e-132C2H2-like zinc finger protein