PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.012G134000.1
Common NamePOPTR_0012s13880g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 283aa    MW: 29980.8 Da    PI: 4.7164
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.012G134000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.85e-17114163155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         + ykG+r +  +g+Wv+eIr+p++   ++r++lg++ t+e+Aa+a++aa+++l+g
  Potri.012G134000.1 114 PSYKGIRLR--SGKWVSEIREPRK---TTRVWLGTYPTPEMAAAAYDAAALALKG 163
                         579***976..5*********843...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.00E-15114173No hitNo description
PfamPF008474.4E-11114163IPR001471AP2/ERF domain
PROSITE profilePS5103219.796115171IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-26115173IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-18115173IPR016177DNA-binding domain
SMARTSM003804.8E-28115177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MANTNSNVPQ ADQSPPPQPS NPSIQVPDPP SSILLPILQD DQYAPHSTSS NKSPRLIPSP  60
AGSLGQPLTV RQDEYSPRFG FPGQPVSGRQ DDQSPRSNRS SGGSSTQPTS GRHPSYKGIR  120
LRSGKWVSEI REPRKTTRVW LGTYPTPEMA AAAYDAAALA LKGPDAPLNF PESILSYPIP  180
ASASSSDIRA AAASAASTRS PRPEAGPNPE RDRLETEGTS SSTTTADIQS GQEFIDEEEL  240
LNLPSLLVDM AGGMLVSPPR INTPSSDDSP GNSDAENLWS YH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-131131721273Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.012G134000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB5887540.0AB588754.1 Populus nigra PncERF1 mRNA for AP2/ERF domain-containing protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002318847.30.0ethylene-responsive transcription factor ERF025
SwissprotQ9FJ902e-51ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A2K1YD420.0A0A2K1YD42_POPTR; Uncharacterized protein
STRINGPOPTR_0012s13880.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4029022
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.13e-35ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]