PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.012G117500.1
Common NamePOPTR_0012s11820g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Trihelix
Protein Properties Length: 356aa    MW: 39719.7 Da    PI: 8.3571
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.012G117500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix53.56.5e-1719111286
            trihelix   2 WtkqevlaLiearremeerlrrgk........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                         Wt +e+++Liea+r ++er  +++          + +W++v ++++++ + rs++qC++kw+nl ++ykk+++ e+k +++ +++   + +
  Potri.012G117500.1  19 WTVSETMVLIEAKRMDDERRMKRSdsaegrskPTELRWKWVEDYCWKQECLRSQNQCNDKWDNLMRDYKKVRDYERKIAETGERNGGSYWK 109
                         *************96666655422233333338899*****************************************98888888777777 PP

            trihelix  85 le 86 
                         le
  Potri.012G117500.1 110 LE 111
                         76 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.9571183IPR017877Myb-like domain
PfamPF138373.0E-111895No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MMADQGGKSL IREYKKGNWT VSETMVLIEA KRMDDERRMK RSDSAEGRSK PTELRWKWVE  60
DYCWKQECLR SQNQCNDKWD NLMRDYKKVR DYERKIAETG ERNGGSYWKL EKNERKERNL  120
PSNMLPQIYE ELVEVVERRG GQQRMLTAAG GSGSNPNTSY VVERPITDVQ PSVLPPLLQH  180
QVSAAPTPAL PLPPPCPPPS QQPQAQPPPP IQFPEPFPTL VLIGLVPHFH VLEMCDSSDS  240
DTSEYSNSPA KRRRRGGGGG EGTSGGTASA STSHEVGTAI SKSASIIAEA IQACDEREER  300
RHRDLLSLHE RRLKIEESKT EINRQGISGL VDAINKLANS ILALASHKNQ SSGPK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.116660.0bud
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2084850.0AC208485.1 Populus trichocarpa clone JGIACSB253-H05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011001294.10.0PREDICTED: protein enabled homolog isoform X1
TrEMBLU5FZS60.0U5FZS6_POPTR; Uncharacterized protein
STRINGPOPTR_0012s11820.11e-180(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP18811637
FabidsOGEF68043242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.19e-57Trihelix family protein