PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.012G106000.1
Common NamePOPTR_0012s10780g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 547aa    MW: 60311.5 Da    PI: 6.3106
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.012G106000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.71.6e-11362404754
                         HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                         ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A++Y+k+L
  Potri.012G106000.1 362 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIDYLKEL 404
                         79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.682355404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-16358424IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-9361404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-14361410IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-15362417IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.57E-12362408No hitNo description
CDDcd048732.12E-6475535No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MLYRLNSNNI WLEDHKEEQD STTNHHHHNN ITNTAAGCGG VMLEGKEEMG SLSTFKSMFE  60
VEDEWYVTNN NSTIHQNHQD SIKDLTFSPS LVDPDNLLLH QVDSSSSCSP SSSVFNNLDP  120
SQVHYFMHPK PTLSSLLNVV SNNPLEHGFD LSEIGFLENQ GTNSTTTANV SSLLNRGSGV  180
LGNLGNFTDL SSNSQISIPN LCSDPQFSSS RMLQLPENGP GFNGFRGLDE ISGNQLFFNR  240
SKLLRPLETY PSMGAQPTLF QKRAALRKNL GEVERDKGKR EMTQISEEKD KKRKFSSGDD  300
FLEDVSFDGS GLNYDSDEFT ENTNLEETGK NGGNSSKANS GVTGGGVDQK GKKRGLPAKN  360
LMAERRRRKK LNDRLYMLRS VVPKISKMDR ASILGDAIDY LKELLQRIND LHNELESTPP  420
SSSLTPTTSF HPLTPTPSAL PSRIMDKLCP GSLPSPNGQP ARVEVRVREG RAVNIHMFCG  480
RKPGLLLSTM RALDNLGLDI QQAVISCFNG FAMDIFRAEQ CKEGQDMHPD QIKAVLLDSA  540
GFHGAM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1351369KKRGLPAKNLMAERRRRKK
2363370ERRRRKKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.128020.0bud| catkin| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP1654060.0KP165406.1 Populus simonii x Populus nigra inducer of CBF expression 1 (ICE1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002318166.10.0Transcription factor ICE1 family protein
SwissprotQ9LSE21e-137ICE1_ARATH; Transcription factor ICE1
TrEMBLB9I3Y80.0B9I3Y8_POPTR; Transcription factor ICE1 family protein
STRINGPOPTR_0012s10780.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5571678
FabidsOGEF24143482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-112bHLH family protein