PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.012G092500.3
Common NamePOPTR_0012s09400g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 331aa    MW: 37067.1 Da    PI: 5.057
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.012G092500.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH41.71.9e-13130152426
                         ---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                         e C f+++tGtCk+G++CkF+H+
  Potri.012G092500.3 130 EDCAFYMKTGTCKFGANCKFNHP 152
                         89********************9 PP

2zf-CCCH34.63.3e-11178200527
                         --SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                         +C+++++tG CkyG  C+F+H++
  Potri.012G092500.3 178 ECKYYLKTGGCKYGTACRFNHSR 200
                         6********************95 PP

3zf-CCCH375.5e-12229252326
                         S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                         +++C +f+r+G Ck+G++Ck++H+
  Potri.012G092500.3 229 EKECEYFMRNGSCKFGANCKYNHP 252
                         689********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902298.5E-7125154IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.009126154IPR000571Zinc finger, CCCH-type
SMARTSM003564.9E-7126153IPR000571Zinc finger, CCCH-type
PfamPF006426.9E-11130152IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-5132151IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.089173201IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-4173200IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-6177204IPR000571Zinc finger, CCCH-type
PfamPF006427.7E-9178200IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-6179200IPR000571Zinc finger, CCCH-type
SMARTSM003564.4E-6226253IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.15226254IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-6227253IPR000571Zinc finger, CCCH-type
PfamPF006427.5E-10229252IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4232251IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MDQQIESPIP IIHKEIPQLG FQSFSSSPRF PSTPSDPDQT ALDDDNHLHQ ELQNQLDLKE  60
GSLNSNDSHE EEEEEEEEFK SDKKIEFFYE SIEKVGDGGD DLENKNERSN DIENNNSSGY  120
HQYPVRPEAE DCAFYMKTGT CKFGANCKFN HPLRRKNQTV KEKTKEREEA TEKPSLIECK  180
YYLKTGGCKY GTACRFNHSR AKYSVPPVKI PMSPALELNF LGLPIRLGEK ECEYFMRNGS  240
CKFGANCKYN HPDPTAVGGS DHPSTFLNGG SASLPVPSSS SVGSWSSPRA LNDPTSFVPI  300
MFSPNQGVPP QSPDWNGYQK EVCIHLCHMP *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.99410.0leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.012G092500.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2231650.0CU223165.1 Populus EST from leave.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024438164.10.0zinc finger CCCH domain-containing protein 67
SwissprotQ9STM48e-73C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLA0A2I4KKM10.0A0A2I4KKM1_POPTR; C3H family protein
STRINGPOPTR_0012s09400.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.14e-63C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]