PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.012G040900.1
Common NamePOPTR_0012s03770g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ZF-HD
Protein Properties Length: 183aa    MW: 20662.9 Da    PI: 6.8633
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.012G040900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer90.91.2e-28959558
         ZF-HD_dimer  5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58
                         YkeCl+NhAaslG++a+DGCgEf+ +   +++ ++l+CaACgCHRnFHR+ + 
  Potri.012G040900.1  9 LYKECLRNHAASLGSYATDGCGEFTLD---DTSLSTLQCAACGCHRNFHRKVSY 59
                        7*************************8...6789*****************875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047704.5E-24957IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257746.0E-181056IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152322.9721057IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.5E-241056IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.609.7E-2999165IPR009057Homeodomain-like
SuperFamilySSF466891.57E-16100164IPR009057Homeodomain-like
TIGRFAMsTIGR015654.6E-31106164IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MESDSTNDLY KECLRNHAAS LGSYATDGCG EFTLDDTSLS TLQCAACGCH RNFHRKVSYS  60
NRRDHIMHSP SSETVVMEMM DYAEGNNERN SRPPVMVVES GERSGKKRFR TKFTAEQREK  120
MMEFAEKLGW KLQRKDEEDE VERFCEGIGV SRQVFKVWMH NHKNSSSTTS ASPGNASSLT  180
TQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A7e-221071691879ZF-HD homeobox family protein
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers and, to a lower extent, in inflorescence, stems and leaves. {ECO:0000269|PubMed:16428600}.
Functional Description ? help Back to Top
Source Description
UniProtEssential protein. Putative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.012G040900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002318316.31e-136zinc-finger homeodomain protein 9
SwissprotQ9SB613e-42ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBLA0A2K1Y8K41e-135A0A2K1Y8K4_POPTR; Uncharacterized protein
STRINGPOPTR_0012s03770.11e-135(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79822844
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.11e-44homeobox protein 22
Publications ? help Back to Top
  1. Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA
    Seed tolerance to deterioration in arabidopsis is affected by virus infection.
    Plant Physiol. Biochem., 2017. 116: p. 1-8
    [PMID:28477474]