PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.011G057000.1
Common NamePOPTR_0011s05580g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 244aa    MW: 26292.1 Da    PI: 9.1381
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.011G057000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.41.1e-202877255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        +++GVr ++ +gr++AeIrdp   gk+ r++lg+f+taeeAa+a++aa+++++g
  Potri.011G057000.1 28 HFRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAARAYDAAAREFRG 77
                        69*******.**********8...557************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.99E-212885IPR016177DNA-binding domain
PROSITE profilePS5103223.1032885IPR001471AP2/ERF domain
CDDcd000189.50E-182886No hitNo description
Gene3DG3DSA:3.30.730.101.1E-302885IPR001471AP2/ERF domain
SMARTSM003801.6E-372891IPR001471AP2/ERF domain
PfamPF008473.8E-142877IPR001471AP2/ERF domain
PRINTSPR003675.0E-112940IPR001471AP2/ERF domain
PRINTSPR003675.0E-115167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MAPREKTAPG KVNGGTCGGA GGGGKEVHFR GVRKRPWGRY AAEIRDPGKK SRVWLGTFDT  60
AEEAARAYDA AAREFRGSKA KTNYAYPSYE NVRKNTISVD SNHKASNKNN SCGGGGGGNS  120
NNNQSPSQSS TVEFSSSDTP LDLNLGPAVS TVRLPFQPMV MNHQQVIYFD AVMKSRCQKT  180
VFDNGYHHHH HPNQPMGFSC GGIQSDSDSS SIVFDLNHQD IKTPRSSVDL DLNLNLPPPP  240
EIA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-212884259ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.61430.0bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.011G057000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006377397.20.0ethylene-responsive transcription factor 11
TrEMBLA0A2K1YG080.0A0A2K1YG08_POPTR; Uncharacterized protein
STRINGPOPTR_0011s05580.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33034189
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.12e-24erf domain protein 9