PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.011G056600.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 762aa    MW: 83846.9 Da    PI: 4.8995
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.011G056600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH261.6e-08264283525
                         --SGGGGTS--TTTTT-SS-S CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                         +C+ffa+ G+C +G++C+F H
  Potri.011G056600.1 264 ICDFFAK-GWCIRGSSCRFLH 283
                         8******.************* PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0017259285IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.718259286IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-6259284IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-6264283IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.2E-4264284IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010220Biological Processpositive regulation of vernalization response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 762 aa     Download sequence    Send to blast
MPPSAAATGD DDEDHALPSP NPSFAQISGS DMDIDNNGDD EEEEDPEEEV GGGDDDDDDE  60
KIEEIEEKEE VEEEEVDQRR NDNRQHLESD RQMGSHSTHE MSELREDSIS NFKCSGPLDG  120
PLTLQKEKSC VNYLDSWSPK LSKHLVIAQK NGTLEHAINK TDAFRNSKTH LSNSSEAIAV  180
ETTEPFVITG IEVDVVLSKR NCLGQEANVV LDSKEELKPV DVKSEDSKEQ TESRISRLVA  240
SGTRARSLSP STELRDGNKR AAVICDFFAK GWCIRGSSCR FLHTTNKADN TGQQLGVDEV  300
ATREDQFDEG VRNILETPKF PHFPDPVAAS TGKEATFSSH FSSERLPPLE HKENERLHQL  360
DDKHKLSLRQ RVGIPLNAKQ FSSSKDDPGF SSSFKDVGIE NFRQQWPATD YGSYTSLINR  420
GSSFSFSSSF DTSLLGSQKL LDSDRASRSS SLLQSASAFS GSEPESLSLA SVPGDQLRHA  480
EHKTKISSND WEPSVPFRPS FFITPEMISS AGSKYDPLRD SFVLPNVGDK SFKFSFFSLG  540
ASISNTSQQP IYGDSLSNRN FGTEFNGDKS TISSHDKPHG SLSDKNCSTP GKDSFTTATV  600
TGGAGTADGE NGSALKEESA SGIGYDKVNR VTNKIDRDAR PQTDGSRHEK DLKADSVRQN  660
NDMEVDQKIG GDTQKESKVL RHFRSALIDF VKDLLKPTWR EGHLSKDAHN TIVKKTVEKV  720
LSTLQPHQIP ATVESIKQYL SSSQPKMAKL VEGYISKYGK S*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.011G056600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006377394.20.0protein FRIGIDA-ESSENTIAL 1 isoform X1
TrEMBLA0A2K1YG220.0A0A2K1YG22_POPTR; Uncharacterized protein
STRINGPOPTR_0011s05550.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108052733
Representative plantOGRP728179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.15e-39C3H family protein