PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.011G055600.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Dof
Protein Properties Length: 358aa    MW: 39200.8 Da    PI: 8.883
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.011G055600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.61.6e-3961120362
              zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                         ++alkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+++
  Potri.011G055600.1  61 QQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVK 120
                         7899*****************************************************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027019.9E-3462118IPR003851Zinc finger, Dof-type
ProDomPD0074789.0E-2863118IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.52564118IPR003851Zinc finger, Dof-type
PROSITE patternPS01361066102IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MIPLREEMLG NCEKMVVISS TTNAWPQNQI DEKSLMASTS KLMERPSQEV LSQPQQQQQL  60
QQALKCPRCD SSNTKFCYYN NYSLSQPRHF CKACKRYWTR GGTLRNVPVG GGCRKNKRVK  120
RPASAAEGAS NSVSSANPNP QTPIDHISST SNHINPLFYG LSGSNPSEMN LPFPGRFNPR  180
MDSAVSGYHD LQPQLNALAL GFSSGIMTTN DANGFNPTKQ IQDVVTSNSL LSSYSNLFGS  240
STTSTNTTSP TIASLLASSF NQQKFTNSGI KESTRAPNYF QSLTVPFKEL QMNGNSESGI  300
GMKGVKTEHN QNRLDWNVPC QNQIEQVGLS DPSMYWNTTT SVGSWHDPAN MGSSVLL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.011G055600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT1647380.0KT164738.1 Populus tomentosa clone Potom.011G26508 F-box family protein 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006377384.20.0dof zinc finger protein DOF1.4
TrEMBLA0A2K1YFZ80.0A0A2K1YFZ8_POPTR; Uncharacterized protein
STRINGPOPTR_0011s05450.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45223356
Representative plantOGRP3817445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28310.14e-40Dof family protein