PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.011G054400.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Dof
Protein Properties Length: 171aa    MW: 19612.4 Da    PI: 10.8624
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.011G054400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof32.12.4e-1061883562
              zf-Dof 35 aCrryWtkGGalrnvPvGggrrknkkss 62
                        +CrryWt GG lrnv v g +r+ k+s+
  Potri.011G054400.1 61 SCRRYWTLGGNLRNVSVRGDCRRGKRSK 88
                        8**********************99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074780.015181IPR003851Zinc finger, Dof-type
PfamPF027017.5E-76186IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MFVAKSTKDY NFTAMQREIQ QDRGGSEDVK PNERRKLKPA KGYDQQKHYK SATHTRGGAL  60
SCRRYWTLGG NLRNVSVRGD CRRGKRSKRL SLLVLVRINR LSHSYSHNHN LSNITWLPLR  120
SFKFCFEGKR IKEFGLTSSW DVFDGILEDK THPIGPSRNY GLCFNGLMAT *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.011G054400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K1YFY91e-124A0A2K1YFY9_POPTR; Uncharacterized protein
STRINGPOPTR_0011s05420.12e-92(Populus trichocarpa)