PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G233500.1
Common NamePOPTR_0010s23970g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Trihelix
Protein Properties Length: 473aa    MW: 50892.9 Da    PI: 8.3115
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G233500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix56.66.7e-1884168186
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergf...erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         +W++  + +L+ea++e+ ++l+rg+l++ +Weev+++++erg    ++s +qCk+k++nl+kryk + ++ ++  s   s++ +f+++e
  Potri.010G233500.1  84 EWSDTAISCLLEAYTEKFNQLNRGNLRGRDWEEVAEAVSERGGsnnKKSVEQCKNKIDNLKKRYKVELQRISG--S--GSSWHWFKHIE 168
                         5*************************************8887645578*****************98887776..3..446999*9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.4E-2382168No hitNo description
Gene3DG3DSA:3.40.1160.104.9E-70229465IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536337.07E-56232465IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B32.927232466IPR015963Uridylate kinase, bacteria
CDDcd042543.74E-114235466No hitNo description
PfamPF006963.8E-23236445IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0046939Biological Processnucleotide phosphorylation
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MSTDDFPLLD APPPHPTTRH PDAASVTTTG DYYYSDHDKS SATPSSKRNH QNHYYNNNNK  60
RSKSNSNTEL ESSDYRDYRK DREEWSDTAI SCLLEAYTEK FNQLNRGNLR GRDWEEVAEA  120
VSERGGSNNK KSVEQCKNKI DNLKKRYKVE LQRISGSGSS WHWFKHIEVI MGNACNGKSS  180
GGGAAAAAGG DSEGGGGGSC GNANVVVKQV KRYTSGSAAF ANSLKTKPVT NLKWRRVVFK  240
ISGSALAGNC QNIDPKVAMQ IAQEVATASR VGLEIAIVLG GRNFFCGESW ISATGLERPT  300
ACQIGMMATV MNSVLLQSAL EKHGVQARVQ SAFAMPELAE PYSRQRAIRH LEKGRVVIFG  360
GVGAGAGNPL FTTDTAAALR ASEINADALL KGTIVNGVYD SHAGSSNIIL DHISFRDVVS  420
RGATSMDMMA ITYCEENGIP VVVFNLLEPG NISRALCGDQ VGTLIDQAGR IS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3nwy_A9e-6323446550279Uridylate kinase
3nwy_B9e-6323446550279Uridylate kinase
3nwy_C9e-6323446550279Uridylate kinase
3nwy_D9e-6323446550279Uridylate kinase
3nwy_E9e-6323446550279Uridylate kinase
3nwy_F9e-6323446550279Uridylate kinase
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011024284.10.0PREDICTED: uncharacterized protein LOC105125508
RefseqXP_011024285.10.0PREDICTED: uncharacterized protein LOC105125508
TrEMBLB9HUY40.0B9HUY4_POPTR; Uncharacterized protein
STRINGPOPTR_0010s23970.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP61611218
FabidsOGEF40623252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.11e-149Trihelix family protein