PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G140700.1
Common NamePOPTR_0010s15060g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 184aa    MW: 19886.8 Da    PI: 10.2562
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G140700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.000144971123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C++C++ F ++  L  H++ H
  Potri.010G140700.1 49 FECQYCHRGFANSQALGGHQNAH 71
                        89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.83E-64776No hitNo description
Gene3DG3DSA:3.30.160.602.9E-44775IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.7394976IPR007087Zinc finger, C2H2
PROSITE patternPS0002805171IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MSASKNTNLG DPQKKPPSST LKLLGFSVKR YQEELPATTP FNIEYIKKFE CQYCHRGFAN  60
SQALGGHQNA HKRERQRAKR ALYFFKDHQH QRIKPAGPII NAHAARSGPL ICASGSRSIK  120
AAAGVARFEC PAQSPSLLML DHHIDPRPLV GPVGAGAISA TSLIAEDEGA GVDLHLRLAP  180
LHP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G140700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002314923.11e-133zinc finger protein GIS3
TrEMBLB9HWW51e-132B9HWW5_POPTR; Uncharacterized protein
STRINGPOPTR_0010s15060.11e-133(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39032449
Representative plantOGRP8215137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14010.15e-15C2H2 family protein