PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G046600.1
Common NamePOPTR_0010s05670g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 418aa    MW: 45651 Da    PI: 6.844
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G046600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.23.6e-1754103255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +gr++AeIrdp     +  r +lg+f+taeeAa a++ a++ ++g
  Potri.010G046600.1  54 RYRGVRRRP-WGRYAAEIRDPQ----SkERRWLGTFDTAEEAACAYDYAARVMRG 103
                         59*******.**********93....35999*******************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.54E-2154111IPR016177DNA-binding domain
SMARTSM003805.1E-3154117IPR001471AP2/ERF domain
PfamPF008472.0E-1054103IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.8E-2954110IPR001471AP2/ERF domain
PROSITE profilePS5103222.0154111IPR001471AP2/ERF domain
CDDcd000181.33E-2854110No hitNo description
PRINTSPR003672.5E-95566IPR001471AP2/ERF domain
PRINTSPR003672.5E-97793IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MEEALRRLNG VPSHMPESNS YEPIIADLQK KSAPSTTTNK RSLKEGGGNS GNMRYRGVRR  60
RPWGRYAAEI RDPQSKERRW LGTFDTAEEA ACAYDYAARV MRGIKARTNF VYPETYSATT  120
DSHNLLPPFT FSKSSHHQPS RQYNTVPSSN WSSVGHSHVG DFSAGGSAPQ RSTSGSSANT  180
STLNMLFLRD FVNSSSGSSS QNHSQPLYDH FPCINGSSYS APSTFAGGSL GNPSSNTSST  240
SPYNFSGTLA DSTVTSLPHM EFNQNYTPGV LNSPNSKAEE LEFFPQEPSG SGLLQEIIQG  300
FLPKHSTEKI DFSKSYGESM VAPSAEIISG GQSLDGLRRS TKYFVKNEHQ GAYLDHEGMK  360
SSGQPEGCYR TGVSCHDQVS YDNEMSLNLP VGQDSFLEDI FQYPDLMSAF AARFKNA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-1855110359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A6e-1843117176Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G046600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002314597.20.0ethylene-responsive transcription factor ESR2
TrEMBLA0A2K1YNX20.0A0A2K1YNX2_POPTR; Uncharacterized protein
STRINGPOPTR_0010s05670.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41003256
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.11e-14DORNROSCHEN-like