PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G006800.4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 152aa    MW: 17155.8 Da    PI: 10.6109
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G006800.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP226.61.5e-0897124233
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfsl 33 
                          y+G+r+++ +g+W+AeIrdp     +   r++l
  Potri.010G006800.4  97 VYRGIRQRP-WGKWAAEIRDP-----HkgVRVWL 124
                         69*******.**********7.....32477765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.84E-797124IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-1297124IPR001471AP2/ERF domain
SMARTSM003800.001697131IPR001471AP2/ERF domain
PROSITE profilePS5103212.37897124IPR001471AP2/ERF domain
CDDcd000184.31E-1398124No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008219Biological Processcell death
GO:0009723Biological Processresponse to ethylene
GO:0009735Biological Processresponse to cytokinin
GO:0009753Biological Processresponse to jasmonic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051707Biological Processresponse to other organism
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MCGGAIISDF VSVKRGRKPT TEDLWSELDS LSDFLGLDHR SMNNINNGSK KENLSNLKFA  60
QKPRQPNQVI TERVEKPSQA TEQEAGKKKV QRTRKNVYRG IRQRPWGKWA AEIRDPHKGV  120
RVWLVVTEVE VVIIIVTLWT LGCLMILSTS A*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.121470.0bud
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in stems and leaves, and, to a lower extent, in roots, siliques and flowers. {ECO:0000269|PubMed:18836139, ECO:0000269|PubMed:9192694}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:9159183}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00109PBMTransfer from AT3G16770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G006800.4
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By 1-aminocyclopropane-1-carboxylic acid (ACC, ethylene precursor), methyl jasmonate (MeJA), and Botrytis cinerea. Also induced by cadmium. {ECO:0000269|PubMed:18836139, ECO:0000269|PubMed:9159183}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2828323e-38GU282832.1 Populus balsamifera isolate STO11 haplotype A AP2 domain-containing protein RAP2.3 gene, partial sequence.
GenBankGU2828333e-38GU282833.1 Populus balsamifera isolate STO11 haplotype B AP2 domain-containing protein RAP2.3 gene, partial sequence.
GenBankGU2828343e-38GU282834.1 Populus balsamifera isolate GAL12 haplotype A AP2 domain-containing protein RAP2.3 gene, partial sequence.
GenBankGU2828353e-38GU282835.1 Populus balsamifera isolate GAL12 haplotype B AP2 domain-containing protein RAP2.3 gene, partial sequence.
GenBankGU2828363e-38GU282836.1 Populus balsamifera isolate RNA13 haplotype A AP2 domain-containing protein RAP2.3 gene, partial sequence.
GenBankGU2828373e-38GU282837.1 Populus balsamifera isolate RNA13 haplotype B AP2 domain-containing protein RAP2.3 gene, partial sequence.
GenBankGU2828383e-38GU282838.1 Populus balsamifera isolate NWL07 haplotype A AP2 domain-containing protein RAP2.3 gene, partial sequence.
GenBankGU2828393e-38GU282839.1 Populus balsamifera isolate NWL07 haplotype B AP2 domain-containing protein RAP2.3 gene, partial sequence.
GenBankGU2828403e-38GU282840.1 Populus balsamifera isolate FRE01 haplotype A AP2 domain-containing protein RAP2.3 gene, partial sequence.
GenBankGU2828413e-38GU282841.1 Populus balsamifera isolate FRE01 haplotype B AP2 domain-containing protein RAP2.3 gene, partial sequence.
GenBankGU2828423e-38GU282842.1 Populus balsamifera isolate HAY07 haplotype A AP2 domain-containing protein RAP2.3 gene, partial sequence.
GenBankGU2828433e-38GU282843.1 Populus balsamifera isolate HAY07 haplotype B AP2 domain-containing protein RAP2.3 gene, partial sequence.
GenBankGU2828443e-38GU282844.1 Populus balsamifera isolate INU03 haplotype A AP2 domain-containing protein RAP2.3 gene, partial sequence.
GenBankGU2828453e-38GU282845.1 Populus balsamifera isolate INU03 haplotype B AP2 domain-containing protein RAP2.3 gene, partial sequence.
GenBankGU2828463e-38GU282846.1 Populus balsamifera isolate KUU07 haplotype A AP2 domain-containing protein RAP2.3 gene, partial sequence.
GenBankGU2828473e-38GU282847.1 Populus balsamifera isolate KUU07 haplotype B AP2 domain-containing protein RAP2.3 gene, partial sequence.
GenBankGU2828483e-38GU282848.1 Populus balsamifera isolate LOV02 haplotype A AP2 domain-containing protein RAP2.3 gene, partial sequence.
GenBankGU2828493e-38GU282849.1 Populus balsamifera isolate LOV02 haplotype B AP2 domain-containing protein RAP2.3 gene, partial sequence.
GenBankGU2828503e-38GU282850.1 Populus balsamifera isolate STL13 haplotype A AP2 domain-containing protein RAP2.3 gene, partial sequence.
GenBankGU2828513e-38GU282851.1 Populus balsamifera isolate STL13 haplotype B AP2 domain-containing protein RAP2.3 gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002315490.21e-87ethylene-responsive transcription factor RAP2-3 isoform X1
SwissprotP427367e-27RAP23_ARATH; Ethylene-responsive transcription factor RAP2-3
TrEMBLA0A2K1YM032e-86A0A2K1YM03_POPTR; Uncharacterized protein
STRINGPOPTR_0010s00900.14e-86(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.11e-26ethylene-responsive element binding protein
Publications ? help Back to Top
  1. Bueso E, et al.
    The lithium tolerance of the Arabidopsis cat2 mutant reveals a cross-talk between oxidative stress and ethylene.
    Plant J., 2007. 52(6): p. 1052-65
    [PMID:17931347]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chen YC, et al.
    Root defense analysis against Fusarium oxysporum reveals new regulators to confer resistance.
    Sci Rep, 2014. 4: p. 5584
    [PMID:24998294]
  4. Deslauriers SD,Alvarez AA,Lacey RF,Binder BM,Larsen PB
    Dominant gain-of-function mutations in transmembrane domain III of ERS1 and ETR1 suggest a novel role for this domain in regulating the magnitude of ethylene response in Arabidopsis.
    New Phytol., 2015. 208(2): p. 442-55
    [PMID:25988998]
  5. Bui LT,Giuntoli B,Kosmacz M,Parlanti S,Licausi F
    Constitutively expressed ERF-VII transcription factors redundantly activate the core anaerobic response in Arabidopsis thaliana.
    Plant Sci., 2015. 236: p. 37-43
    [PMID:26025519]
  6. Gasch P, et al.
    Redundant ERF-VII Transcription Factors Bind to an Evolutionarily Conserved cis-Motif to Regulate Hypoxia-Responsive Gene Expression in Arabidopsis.
    Plant Cell, 2016. 28(1): p. 160-80
    [PMID:26668304]
  7. Liu W, et al.
    Ethylene response factor AtERF72 negatively regulates Arabidopsis thaliana response to iron deficiency.
    Biochem. Biophys. Res. Commun., 2017. 491(3): p. 862-868
    [PMID:28390898]
  8. Yao Y,Chen X,Wu AM
    ERF-VII members exhibit synergistic and separate roles in Arabidopsis.
    Plant Signal Behav, 2017. 12(6): p. e1329073
    [PMID:28537474]