PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.009G170100.2
Common NamePOPTR_0009s17110g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family FAR1
Protein Properties Length: 752aa    MW: 86487.1 Da    PI: 7.2858
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.009G170100.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR197.81.2e-3077168291
                FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                         fYn+YA++vGFs+r+s+s++s+r+g i++r+fvC keg+r+ ++k+  +++ +r+r+ tr+gCka+l vk++++gkw+v+ ++  HnHel+
  Potri.009G170100.2  77 FYNSYARRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNLNEKRtkDREIKRPRVITRVGCKASLSVKMQDSGKWVVSGFVRGHNHELV 167
                         9***************************************998888545677889***********************************8 PP

                FAR1  91 p 91 
                         p
  Potri.009G170100.2 168 P 168
                         6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.1E-2977168IPR004330FAR1 DNA binding domain
PfamPF105517.5E-33289381IPR018289MULE transposase domain
PfamPF044346.1E-12557603IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096611.226569605IPR007527Zinc finger, SWIM-type
SMARTSM005757.8E-9580607IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 752 aa     Download sequence    Send to blast
MENEVLEFDI GLGSGADDDA VDIDIDDDLP STPPLPLPLP SSTSTPPTQI YLPEGDLLDL  60
EPYESMEFES EEAAKAFYNS YARRVGFSTR VSSSRRSRRD GAIIQRQFVC AKEGFRNLNE  120
KRTKDREIKR PRVITRVGCK ASLSVKMQDS GKWVVSGFVR GHNHELVPLD QVHCLRSHRQ  180
ISGPAKTLVD TLQAAGMGPR RIMSALIKEY GGISKVGFTE VDCRNYMRNN RQKSMEGDIQ  240
LLLDYLRQMH TENPNFFYAL QGGDDQFTGN VFWSDPRARA NYSYFGDTVT FDTTYRSNRY  300
RLPFAPLTGV NHHGQPVLFG CAFLLNETEA SFIWLFQTWL TAMSGHHPVS ITTDHDAVIS  360
SAIMQVFPKT RHRFCKWHIF KKCQEKLSHV LLKHPSFEAD FHKCVNLTES IEEFESCWLS  420
LVDRYELRHH EWLQTIYSDR RQWVPVYLRD AFFAEMSITQ RSDSMNSYFD GYVNASTNLS  480
HFFKLYEKAI ESRNEKEVKA DYDTMNTNPV LKTPSPMEKQ ASGHYTRKLF ARFQEELVGT  540
LTFMASKAED DGESIMYQVA KFGEDHKAYY VKFNVLEMKA RCSCQMFEFS GLLCRHVLAV  600
FRVTNVLTLP SHYILKRWTR NAKSNVILEE HPSDVYNGYL ESHTVRYNTL RHEAFKFVDE  660
GSKSLDTYNV AMVALQEATT RVALATKNEG RTSVKDMDKK IQELRDELEH ANRKCEVYRA  720
NLLSVLKDIE DHKLQLSIKV QSIKISMKDS I*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.54217e-62bud
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.009G170100.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024464730.10.0protein FAR1-RELATED SEQUENCE 5
SwissprotQ9SZL80.0FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A2K1Z9610.0A0A2K1Z961_POPTR; Uncharacterized protein
STRINGPOPTR_0009s17110.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.10.0FAR1-related sequence 5
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]