PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.009G158400.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family FAR1
Protein Properties Length: 853aa    MW: 95887.9 Da    PI: 6.4783
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.009G158400.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR154.83.2e-1762133288
                FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                         fY+eYA+++GFs+++++ ++ k++g i  r+fvC +eg ++++ ++              C+a+l+++++ +gkw+vt++++eHnH+
  Potri.009G158400.2  62 FYDEYARRLGFSTKVAHFTRPKTDGAIAAREFVCGREGLKRRSADS--------------CHAMLRIELK-RGKWVVTHFVKEHNHS 133
                         9**************************************9998877..............**********.***************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.6E-1462134IPR004330FAR1 DNA binding domain
PfamPF105511.9E-23253338IPR018289MULE transposase domain
PROSITE profilePS5096611.165524560IPR007527Zinc finger, SWIM-type
PfamPF044344.3E-10530558IPR007527Zinc finger, SWIM-type
SMARTSM005755.8E-8535562IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 853 aa     Download sequence    Send to blast
MDVHVIDDEE GTSHRGVAYN GDAEPNDSGE ANNGEHDEDG AAELHEPCVG MEFDSENAAK  60
TFYDEYARRL GFSTKVAHFT RPKTDGAIAA REFVCGREGL KRRSADSCHA MLRIELKRGK  120
WVVTHFVKEH NHSTVNPNKV HYLRPRRHFA GAAKSAAKTG QGVGVSPSGD GQAATSTAVN  180
YIARSSNQKR TLGRDAQNLL EYFKKMQAEN PGFFYAIQLD DENRMANVFW ADAKSRTAYT  240
HFGDAVTFET SPRVNQYRVP FAPFTGLNHH GQTILFGCAI LLDDSEASFV WLFKTFLTAM  300
YDQQPASLIT NQDKAIQTAV SQVFPDTRHC ISKWHVLREG QEKLAHVCNA HPNFQLELYN  360
CINLTETIEE FENSWIDILD KYDLRGHDWL QSLHDARAQW VPVYFRDSFF AVMCPNQGFD  420
GTFFDGYVNQ QTTLPMFFRQ YERALDNWFE RELEADFDTI CTTPVLRTPS PMEKQAANLY  480
TRKIFAKFQE ELVETFVYTA NRIEGDAAIS TFRVAKFEDD QRAYMVSLNY PEMRANCSCQ  540
MFEYSGILCR HVLTVFTVTN VLTLPPHYIL KRWTRNAKTG AGTDDRGVDL PGQESLTLRY  600
NNLCREAIKY AEEGAIAVET YNAAMGALRE GGKKVAAVKK NVAKVSPPGC QGGGTGNDDW  660
KTSTSASDTT PFLWPLQDEV TRRFNLNDTG NPVQSVADLN LPRMAPVSLQ RDDGPPGNMV  720
LLPCLKSMTW VMENKSSTPG NRVAVINLKL QDYGKTPSTE LEVKFQLSRV TLEPMLRSMA  780
YISEQLSTPA NRVAVINLKL QDTETTTGES EVKFQVSRDT LGAMLRSMAY IREQLSISVE  840
PQAEPPSKKH RK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.105310.0bud| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.009G158400.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002313618.30.0protein FAR1-RELATED SEQUENCE 3
RefseqXP_024464516.10.0protein FAR1-RELATED SEQUENCE 3
SwissprotQ9ZVC90.0FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBLA0A2K1Z8K80.0A0A2K1Z8K8_POPTR; Uncharacterized protein
STRINGPOPTR_0009s16010.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.20.0FAR1-related sequence 3
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]