PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.009G130600.1
Common NamePOPTR_0009s13310g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 342aa    MW: 38097.7 Da    PI: 7.9344
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.009G130600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.31.5e-0980105127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         +kt+ C  f   GtC+ G++C+FaHg+
  Potri.009G130600.1  80 FKTRVCAKFKT-GTCRNGENCNFAHGM 105
                         69*******99.*************95 PP

2zf-CCCH29.61.1e-09144167225
                         -S---SGGGGTS--TTTTT-SS-S CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                         k++lC+ f+ + +C+yGdrC+F H
  Potri.009G130600.1 144 KMKLCKKFYNGEECPYGDRCNFLH 167
                         789*******66************ PP

3zf-CCCH41.42.3e-13229254126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         +kt+lC  +  tG+C++G++C+FaHg
  Potri.009G130600.1 229 WKTKLCTKWEITGQCPFGEKCHFAHG 254
                         8************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.5E-1476112IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-877110IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-679105IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.25379106IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-780105IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-4142169IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.333142170IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-7142169IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-9144168IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-7144167IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-16224260IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-10227259IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-7228255IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.544228256IPR000571Zinc finger, CCCH-type
PfamPF006429.8E-11229254IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0061158Biological Process3'-UTR-mediated mRNA destabilization
GO:0005829Cellular Componentcytosol
GO:0003730Molecular FunctionmRNA 3'-UTR binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MSYPDSHDSF MSPQASYQAG SDAIGVWPQF VMNNIEQFEH HQPPYKRPRN SEDNPNQSVN  60
SRTPPTNNLP VHKGATNIFF KTRVCAKFKT GTCRNGENCN FAHGMQDLRQ PPPNWKELVG  120
VSVSSEEDRS TATNWEDDQR IIHKMKLCKK FYNGEECPYG DRCNFLHEDP SKFREDTGRF  180
RESSAISIGT TGQALGHGSG VFNAAEVNRP ANNAVSDASR SNIIKPVYWK TKLCTKWEIT  240
GQCPFGEKCH FAHGLAELQA PGGRTEVEAG NAGSVLTKAP PPLLPNNVSP SMIVNVPSLI  300
EEEQGKKCLL KWKGQKKINR IYADWLDDLP LVHNLTNQVQ S*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.009G130600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002313732.20.0zinc finger CCCH domain-containing protein 39
SwissprotQ9LT817e-99C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBLA0A2K1Z7810.0A0A2K1Z781_POPTR; Uncharacterized protein
STRINGPOPTR_0009s13310.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83333345
Representative plantOGRP20451737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.13e-92C3H family protein