PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.009G103100.1
Common NamePOPTR_0009s10590g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 271aa    MW: 30923.8 Da    PI: 9.1069
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.009G103100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.34.9e-17125214198
                         EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                         f+k +++s+v+   +l lp +f+++h        + ++tlede+g + e k+    ++ +  l++GW++F+ +++L +gD +vF+l++ ++
  Potri.009G103100.1 125 FVKPMLQSHVTGGFWLGLPVPFCKAHlpH----YDEMITLEDENGDESETKY--LAGKTG--LSGGWRGFAIDHDLVDGDALVFQLVSPTK 207
                         89************************543....3458***************..555544..***********************998666 PP

                         E..EEEEE- CS
                  B3  90 felvvkvfr 98 
                         f  +v ++r
  Potri.009G103100.1 208 F--KVYIVR 214
                         6..888776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.7E-21118215IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-24119214IPR015300DNA-binding pseudobarrel domain
CDDcd100175.27E-28123214No hitNo description
SMARTSM010192.6E-23125216IPR003340B3 DNA binding domain
PROSITE profilePS5086311.928125216IPR003340B3 DNA binding domain
PfamPF023622.8E-15125214IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MMKSKQTYEE TRQKRMEENK KRMEELNLTK LSQSLLSKPS PVKKAKPRIS RSPVASTPVR  60
RSNRVADKPP VSYKEVPIEP LARPRRSYQR RDLLNRVYAS DEVRIYAIHR ADQIQSSLGA  120
DFPSFVKPML QSHVTGGFWL GLPVPFCKAH LPHYDEMITL EDENGDESET KYLAGKTGLS  180
GGWRGFAIDH DLVDGDALVF QLVSPTKFKV YIVRAYDSED NEDQENTKDD EVKDNTEDKE  240
DEGKSEENGK VSDATDLNRR YSKRIRASKK *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.009G103100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002313112.20.0B3 domain-containing protein At3g19184
SwissprotQ1G3M32e-92Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBLB9HRZ60.0B9HRZ6_POPTR; Uncharacterized protein
STRINGPOPTR_0009s10590.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33363168
Representative plantOGRP9951658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.12e-77B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]