PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.009G101900.1
Common NamePOPTR_0009s10470g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 267aa    MW: 29364.1 Da    PI: 8.476
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.009G101900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.52.2e-20131180255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          y+GVr+++ +g+W+AeIrdp+    + +r++lg+f taeeAa+a+++a+  ++g
  Potri.009G101900.1 131 NYRGVRQRP-WGKWAAEIRDPR----KaARVWLGTFNTAEEAARAYDKAAIDFRG 180
                         59*******.**********94....36**********************99887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.3E-33131188IPR001471AP2/ERF domain
PROSITE profilePS5103225.211131188IPR001471AP2/ERF domain
SMARTSM003804.6E-38131194IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-23131189IPR016177DNA-binding domain
CDDcd000181.92E-35131188No hitNo description
PfamPF008471.9E-14131180IPR001471AP2/ERF domain
PRINTSPR003673.6E-12132143IPR001471AP2/ERF domain
PRINTSPR003673.6E-12154170IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MQRSPKRPKI NEAPSATLFS PPAAPPLRLT QEQEVAVMVA ALKNVVSGTA SMDFSREMNS  60
INMPIITSHP QFGSASNNGN GFCNSILPPS SDLDTCGVCK IKGCLGCNFF PPNQEDKKDD  120
KKGKRKRVKK NYRGVRQRPW GKWAAEIRDP RKAARVWLGT FNTAEEAARA YDKAAIDFRG  180
PRAKLNFPFP DSGIASFEES KEKQEKQQEI SEKRSEFETE TGKDNEFLDN IVDEELQEWM  240
AMIMDFGNGG SSNSSGTASA AATIGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-23130189161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-23130189464ATERF1
3gcc_A2e-23130189464ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.009G101900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002313851.20.0ethylene-responsive transcription factor ERF109
SwissprotQ9SZ069e-36EF109_ARATH; Ethylene-responsive transcription factor ERF109
TrEMBLA0A2I4KKP20.0A0A2I4KKP2_POPTR; ERF family protein
STRINGPOPTR_0009s10470.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29623072
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.11e-33redox responsive transcription factor 1
Publications ? help Back to Top
  1. Matsuo M,Oelmüller R
    REDOX RESPONSIVE TRANSCRIPTION FACTOR1 is involved in age-dependent and systemic stress signaling.
    Plant Signal Behav, 2015. 10(11): p. e1051279
    [PMID:26479402]
  2. Bertea CM,Narayana R,Agliassa C,Rodgers CT,Maffei ME
    Geomagnetic Field (Gmf) and Plant Evolution: Investigating the Effects of Gmf Reversal on Arabidopsis thaliana Development and Gene Expression.
    J Vis Exp, 2018.
    [PMID:26649488]
  3. Bahieldin A, et al.
    Ethylene responsive transcription factor ERF109 retards PCD and improves salt tolerance in plant.
    BMC Plant Biol., 2016. 16(1): p. 216
    [PMID:27716054]
  4. Huang D,Lin W,Deng B,Ren Y,Miao Y
    Dual-Located WHIRLY1 Interacting with LHCA1 Alters Photochemical Activities of Photosystem I and Is Involved in Light Adaptation in Arabidopsis.
    Int J Mol Sci, 2018.
    [PMID:29112140]
  5. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]