PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.009G024900.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 442aa    MW: 48863.8 Da    PI: 8.6576
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.009G024900.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26.4e-05385404323
                         ETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                         C+ CgksF r++ L++H++++
  Potri.009G024900.2 385 CSRCGKSF-RPEKLHSHMKSC 404
                         ********.**********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF061364.0E-4322312IPR010369Protein of unknown function DUF966
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MEASSGIPLK SSSGAGGEVR RIHIIYFLSH NLGRFEHPHL IRVHHFNLNG VYLRDVKRWL  60
ADLRGKDMPK AFAWSYKRRY KKGYVWQDLL DDDLITPISD NEYVLKGSEI FVPPANPLAG  120
SAYGEKKAAD LLMKSENDSQ VENTEVENKA QDHEQLPSPN QICDDTTPRK TTSSEISEES  180
PVFSSEISTV TDDSIKEEED ACKPSNPLEE EQIDIKVEQY SSFYTNFLGS KSKKNQKKRV  240
DNNSNIEKMG TPSSFSSLSS STSSSQATFA KSKSYSSGTS KMLRNLMTCG AVDTNDAALV  300
RQGQKCNSKY KPIEKPADQI CEGEVLGGPA RVFATPWNQQ IQQHDIANAS RKSYDEARGS  360
KKQPGGFGSP KVIPPAYKPV AAPICSRCGK SFRPEKLHSH MKSCRGLKTL TKAASAYVEK  420
TPSPSHISVD SKSEDGYFLT K*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.009G024900.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024464115.10.0uncharacterized protein LOC7488155 isoform X1
RefseqXP_024464116.10.0uncharacterized protein LOC7488155 isoform X1
TrEMBLA0A2K1Z1N70.0A0A2K1Z1N7_POPTR; Uncharacterized protein
STRINGPOPTR_0009s02980.10.0(Populus trichocarpa)