PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.009G024900.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 468aa    MW: 52150.8 Da    PI: 9.1611
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.009G024900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.8e-05411430323
                         ETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                         C+ CgksF r++ L++H++++
  Potri.009G024900.1 411 CSRCGKSF-RPEKLHSHMKSC 430
                         ********.**********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF061363.5E-4349339IPR010369Protein of unknown function DUF966
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MWLLAVIWII SLSESYRIEK KERRSKRMEA SSGIPLKSSS GAGGEVRRIH IIYFLSHNLG  60
RFEHPHLIRV HHFNLNGVYL RDVKRWLADL RGKDMPKAFA WSYKRRYKKG YVWQDLLDDD  120
LITPISDNEY VLKGSEIFVP PANPLAGSAY GEKKAADLLM KSENDSQVEN TEVENKAQDH  180
EQLPSPNQIC DDTTPRKTTS SEISEESPVF SSEISTVTDD SIKEEEDACK PSNPLEEEQI  240
DIKVEQYSSF YTNFLGSKSK KNQKKRVDNN SNIEKMGTPS SFSSLSSSTS SSQATFAKSK  300
SYSSGTSKML RNLMTCGAVD TNDAALVRQG QKCNSKYKPI EKPADQICEG EVLGGPARVF  360
ATPWNQQIQQ HDIANARKSY DEARGSKKQP GGFGSPKVIP PAYKPVAAPI CSRCGKSFRP  420
EKLHSHMKSC RGLKTLTKAA SAYVEKTPSP SHISVDSKSE DGYFLTK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.009G024900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024464118.10.0uncharacterized protein LOC7488155 isoform X2
TrEMBLA0A2K1Z1N70.0A0A2K1Z1N7_POPTR; Uncharacterized protein
STRINGPOPTR_0009s02980.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83781620
Representative plantOGRP866535