PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G203500.1
Common NamePOPTR_0008s20780g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NF-YC
Protein Properties Length: 227aa    MW: 25511.9 Da    PI: 6.1491
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G203500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC1794.4e-56471501101
               NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdi 88 
                         ql++fw++q   ie++tdfknh+lPlarikki+kadedv+misaeaP+++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdi
  Potri.008G203500.1  47 QLQTFWANQyqeIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPIIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDI 137
                         89******9999******************************************************************************* PP

               NF-YC  89 fdflvdivprdel 101
                         fdflvdivpr++l
  Potri.008G203500.1 138 FDFLVDIVPREDL 150
                         **********987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471133.35E-3336141IPR009072Histone-fold
PfamPF008082.4E-2169132IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.1E-3770147IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MMGPSATGSL QSPTQPAVLT ASSAHLAQHQ LAYQHIHHQQ QQQLQQQLQT FWANQYQEIE  60
QTTDFKNHSL PLARIKKIMK ADEDVRMISA EAPIIFARAC EMFILELTLR SWNHTEENKR  120
RTLQKNDIAA AITRTDIFDF LVDIVPREDL KDEVLASVPR GSLPVGGPAD ALPYYYMPPQ  180
LAPQVSAPGM TVGKPVVDQA FYGQQSRPYV PQQIWPQQTQ QPPEDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C1e-41331474119HapE
4g92_C1e-41331474119HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119125RRTLQKN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.178860.0bud
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2158490.0AC215849.1 Populus trichocarpa clone POP023-L07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002311837.21e-167hypothetical protein POPTR_0008s20780g
SwissprotQ8L4B23e-83NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
TrEMBLB9HME01e-167B9HME0_POPTR; Uncharacterized protein
STRINGPOPTR_0008s20780.11e-167(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP31517117
FabidsOGEF125734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.44e-82nuclear factor Y, subunit C9