PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G186300.1
Common NamePOPTR_0008s19030g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 418aa    MW: 45803.7 Da    PI: 6.7967
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G186300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.43.6e-1858107255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +gr++AeIrdp     +  r +lg+f+taeeAa a++ a+++++g
  Potri.008G186300.1  58 RYRGVRRRP-WGRYAAEIRDPQ----SkERRWLGTFDTAEEAACAYDYAALAMRG 107
                         59*******.**********93....35999**********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.70858115IPR001471AP2/ERF domain
PfamPF008471.0E-1158107IPR001471AP2/ERF domain
SMARTSM003801.6E-3358121IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-2958114IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-2158115IPR016177DNA-binding domain
CDDcd000181.97E-3058114No hitNo description
PRINTSPR003672.5E-95970IPR001471AP2/ERF domain
PRINTSPR003672.5E-98197IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009880Biological Processembryonic pattern specification
GO:0048825Biological Processcotyledon development
GO:0051726Biological Processregulation of cell cycle
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MEEALRRLDG IPSHTLETIL HEPIIADLQK KSAPTNTAST TTNKRSLKES GGTGGNMRYR  60
GVRRRPWGRY AAEIRDPQSK ERRWLGTFDT AEEAACAYDY AALAMRGLKA RTNFVYPDAH  120
SATADPAHNL LPPFTFSKSS HQPPRPYTIS SSNCSSLGHP HVGDFSAGGS PPHRSTSDSI  180
AGTSLNMLFL RDFIHSPSGS SFHNHPQPFS DHSPCINGSS NSDPSNFSGG YLVNPSINTI  240
SSSFNISLAD STVTTLPHME FHQNYRAPGD LKRPDAKAEE LEFFPQEPSD SGLLQEIIQG  300
FFPKHSSDKI ASSEISGESV AAPTSEIISV NQSLDGSRRG MRKYFVKNEH HDPYLGHQGI  360
RSGQLIEGCY SGVSSHELPH CNEMSLINHQ MGPDSILDDI FQYPDRMSAF AARFQNV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-19581141471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G186300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX1171660.0JX117166.1 Populus angustifolia isolate SC4F clone a ERF61 (ERF61) gene, complete cds.
GenBankJX1171670.0JX117167.1 Populus angustifolia isolate SC4F clone b ERF61 (ERF61) gene, complete cds.
GenBankJX1171700.0JX117170.1 Populus angustifolia isolate UC17F clone a ERF61 (ERF61) gene, complete cds.
GenBankJX1171710.0JX117171.1 Populus angustifolia isolate UC17F clone b ERF61 (ERF61) gene, complete cds.
GenBankJX1171720.0JX117172.1 Populus angustifolia isolate UC19M clone a ERF61 (ERF61) gene, complete cds.
GenBankJX1171760.0JX117176.1 Populus angustifolia isolate UTBR11 clone a ERF61 (ERF61) gene, complete cds.
GenBankJX1172170.0JX117217.1 Populus angustifolia isolate UTOC14 clone b ERF61 (ERF61) gene, complete cds.
GenBankJX1172180.0JX117218.1 Populus angustifolia isolate UTOC16 clone a ERF61 (ERF61) gene, complete cds.
GenBankJX1172210.0JX117221.1 Populus angustifolia isolate UTOC18 clone b ERF61 (ERF61) gene, complete cds.
GenBankJX1172220.0JX117222.1 Populus angustifolia isolate UTOC1 clone a ERF61 (ERF61) gene, complete cds.
GenBankJX1172260.0JX117226.1 Populus angustifolia isolate UTOC29 clone a ERF61 (ERF61) gene, complete cds.
GenBankJX1172280.0JX117228.1 Populus angustifolia isolate UTOC30 clone a ERF61 (ERF61) gene, complete cds.
GenBankJX1172340.0JX117234.1 Populus angustifolia isolate WYSR51 clone a ERF61 (ERF61) gene, complete cds.
GenBankJX1172360.0JX117236.1 Populus angustifolia isolate WYSR57 clone a ERF61 (ERF61) gene, complete cds.
GenBankJX1172370.0JX117237.1 Populus angustifolia isolate WYSR57 clone b ERF61 (ERF61) gene, complete cds.
GenBankJX1172380.0JX117238.1 Populus angustifolia isolate WYSR62 clone a ERF61 (ERF61) gene, complete cds.
GenBankJX1172400.0JX117240.1 Populus angustifolia isolate WYSR77 clone a ERF61 (ERF61) gene, complete cds.
GenBankJX1172440.0JX117244.1 Populus angustifolia isolate WYSR83 clone a ERF61 (ERF61) gene, complete cds.
GenBankJX1172500.0JX117250.1 Populus angustifolia isolate WYSR93 clone a ERF61 (ERF61) gene, complete cds.
GenBankJX1172510.0JX117251.1 Populus angustifolia isolate WYSR93 clone b ERF61 (ERF61) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002311764.30.0ethylene-responsive transcription factor ESR2
TrEMBLA0A2K1ZJK20.0A0A2K1ZJK2_POPTR; Uncharacterized protein
STRINGPOPTR_0008s19030.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41003256
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.16e-14DORNROSCHEN-like