PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G168200.1
Common NamePOPTR_0008s16800g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 200aa    MW: 22094.9 Da    PI: 10.8352
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G168200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.000442747323
                        ETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                        C +C+ +F++   L  Hi +H
  Potri.008G168200.1 27 CRICDHVFTSVQALIDHIESH 47
                        ******************999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.6422552IPR007087Zinc finger, C2H2
PROSITE patternPS0002802747IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MAGFGWSLRH GNTLGSKRPL LPSQIACRIC DHVFTSVQAL IDHIESHMVE DVETARWKNG  60
LSFSSSRADP LANPFSFGPS TPSRSPQTGF LGHSRYNFLS STERNPAFSP STPQNIASAQ  120
PIIRAPQSQR SSLARNKYTV GRSQHVPFAL PTQPKLVMEE PHSIDRTRPF LRQLERPFSS  180
GGNHGKRSYA ETLDLTLKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G168200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011030483.15e-67PREDICTED: uncharacterized protein LOC105129916
TrEMBLB9HKH61e-144B9HKH6_POPTR; Uncharacterized protein
STRINGPOPTR_0008s16800.11e-145(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14890812