PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G166000.1
Common NamePOPTR_0008s16590g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 139aa    MW: 15290 Da    PI: 8.4248
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G166000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.21.2e-191667256
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                        +y+GVr ++ +g+++AeIrd +    + +r++lg+f taeeAa+a+++a+ +++g+
  Potri.008G166000.1 16 KYRGVRKRP-WGKFAAEIRDSTR---HgARVWLGTFNTAEEAARAYDRAAYAMRGH 67
                        8********.**********422...25**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.6E-301675IPR001471AP2/ERF domain
SMARTSM003803.0E-341680IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-231675IPR016177DNA-binding domain
PROSITE profilePS5103223.0641674IPR001471AP2/ERF domain
PfamPF008473.8E-151667IPR001471AP2/ERF domain
CDDcd000184.02E-171673No hitNo description
PRINTSPR003679.6E-121728IPR001471AP2/ERF domain
PRINTSPR003679.6E-124056IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MDGDRTKSKD GGGEVKYRGV RKRPWGKFAA EIRDSTRHGA RVWLGTFNTA EEAARAYDRA  60
AYAMRGHLAI LNFSNEYPNM AGSASVGSSG STPYFSSGYS GPSSSSPSML REVFEFECLD  120
DKLLEEMLEQ EEKKSKKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-351612314114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G166000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006379893.11e-98ethylene-responsive transcription factor ERF096
SwissprotQ9LTC56e-43ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLU5G2Q33e-97U5G2Q3_POPTR; Uncharacterized protein
STRINGPOPTR_0008s16590.14e-98(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.11e-26ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]