PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G133700.4
Common NamePOPTR_0008s13320g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 328aa    MW: 35565.8 Da    PI: 6.3286
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G133700.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.0011125147123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++Cp+Cg+s+ + ++   H  t+
  Potri.008G133700.4 125 FECPICGQSYQSEEEVSIHVETC 147
                         89**********99999998887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd092122.26E-19182272No hitNo description
SuperFamilySSF1435034.58E-17190260IPR018997PUB domain
PfamPF094093.1E-16191262IPR018997PUB domain
SMARTSM005801.7E-15193257IPR018997PUB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MDDMKDKFKG FMKKVSSSSS PSKFKGQGRV LGGGGSTPSQ SSSGPTNPLH ARYSQPVNSN  60
NSKPKPNPSS SLTSSSNSKP LPEKRSNLDQ KKPTPANKTT NGLDPFDSLI TTSKRSQNGY  120
SLNVFECPIC GQSYQSEEEV SIHVETCVNN SNANSPVKSN DRVVGDDSAV EESSGSELET  180
CVSAYLSGKP LEGSVEVVLR LLRNIVKEPA NAKFRRIRMG NPKIREAVTE VAGGVELLEI  240
VGFGLKEEGG EMWAILEEAP KEEKIGLINK VIGFLEPRKE EQEEPRAEAK PSDAPAETEE  300
QVEPKKVDRQ RQELSCQIHF TASLLKS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.121114e-89bud| catkin
Functional Description ? help Back to Top
Source Description
UniProtFacilitates the interaction of SYP31 and CDC48A, thereby regulating an CDC48A membrane-associated function (Ref.8). Appears to act as a negative regulator mediating the powdery mildew-plant interaction (PubMed:19176722, PubMed:23301616). {ECO:0000269|PubMed:19176722, ECO:0000269|PubMed:23301616, ECO:0000269|Ref.8}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G133700.4
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in response to powdery mildew and by benzothiadiazole (BTH) treatment. {ECO:0000269|PubMed:19176722}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002311527.20.0plant UBX domain-containing protein 2
SwissprotQ9ZU938e-88PUX2_ARATH; Plant UBX domain-containing protein 2
TrEMBLB9HJF40.0B9HJF4_POPTR; Uncharacterized protein
STRINGPOPTR_0008s13320.10.0(Populus trichocarpa)
Publications ? help Back to Top
  1. Suzuki T,Park H,Till EA,Lennarz WJ
    The PUB domain: a putative protein-protein interaction domain implicated in the ubiquitin-proteasome pathway.
    Biochem. Biophys. Res. Commun., 2001. 287(5): p. 1083-7
    [PMID:11587532]
  2. Rancour DM,Park S,Knight SD,Bednarek SY
    Plant UBX domain-containing protein 1, PUX1, regulates the oligomeric structure and activity of arabidopsis CDC48.
    J. Biol. Chem., 2004. 279(52): p. 54264-74
    [PMID:15498773]
  3. Chandran D,Rickert J,Cherk C,Dotson BR,Wildermuth MC
    Host cell ploidy underlying the fungal feeding site is a determinant of powdery mildew growth and reproduction.
    Mol. Plant Microbe Interact., 2013. 26(5): p. 537-45
    [PMID:23301616]