PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G123100.1
Common NamePOPTR_0008s12210g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 246aa    MW: 25899.7 Da    PI: 8.8009
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G123100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.4e-056688123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C++C++ F ++  L  H++ H
  Potri.008G123100.1 66 YECQYCSREFANSQALGGHQNAH 88
                        99******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.7E-56392IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.78E-66393No hitNo description
PfamPF139121.2E-56690IPR007087Zinc finger, C2H2
PROSITE profilePS5015712.1756693IPR007087Zinc finger, C2H2
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MAELDYETKH NSTTTSTRLK LFGFNVSEDE ELIATTYSSS LKSSSCNTPD SSSFGTATAT  60
GDSRKYECQY CSREFANSQA LGGHQNAHKK ERQQLKRAQM QATRNAAAAA VSFGRNPMIS  120
AFAPPPHLLA QAAGQVVVPE ASQSWVYLPR AAPPFHVSHG SVFPRGVGGR GVGSLTYGGS  180
VGDFGLASSA SGPYQQVQSR AHISRVIGDL NGPTSLSRFS KSDGGPSFDD KLSLDLHLSL  240
SPAGP*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for the initiation of inflorescence trichomes in response to gibberellin and cytokinin. Acts upstream of GIS, GIS2, ZFP8, and the trichome initiation factors GL1 and GL3. Binds the promoter region of GIS and GIS2, which may be direct targets of GIS3. {ECO:0000269|PubMed:25640859}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G123100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002312409.10.0zinc finger protein GIS3
SwissprotQ9C9H14e-55GIS3_ARATH; Zinc finger protein GIS3
TrEMBLB9HJ481e-180B9HJ48_POPTR; Uncharacterized protein
STRINGPOPTR_0008s12210.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31981316
Representative plantOGRP8215137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41940.17e-11zinc finger protein 8
Publications ? help Back to Top
  1. Sun L, et al.
    GLABROUS INFLORESCENCE STEMS3 (GIS3) regulates trichome initiation and development in Arabidopsis.
    New Phytol., 2015. 206(1): p. 220-30
    [PMID:25640859]