PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G117500.2
Common NamePOPTR_0008s11630g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family G2-like
Protein Properties Length: 380aa    MW: 41495.8 Da    PI: 7.5205
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G117500.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.26.9e-32218273156
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                         k+r++W+peLH+rF++a++qLGGs+ AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  Potri.008G117500.2 218 KQRRCWSPELHRRFLHALRQLGGSHAATPKQIRELMKVDGLTNDEVKSHLQKYRLH 273
                         79****************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.4E-29215276IPR009057Homeodomain-like
PROSITE profilePS5129415.454215275IPR017930Myb domain
SuperFamilySSF466891.49E-18216276IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-26218273IPR006447Myb domain, plants
PfamPF002492.0E-7220271IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0055062Biological Processphosphate ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MDFAEKIQRC GEYVEALEEE RRKIQVFERE LPLCLELVTQ AIEACKRELS GTTTEYNMHG  60
QSECSEQTSS EGPVLEEFIP IKRTHSYDEN DNENDDHQEQ QSHDNSKRNK TSISSGNNDH  120
KKKSDWLRSV QLWNHSPDLP QKQVLKAAVT EVKRNGAGGA FQPFHREKSI GKTSNQAIAK  180
APTSVPASTT SSTAVVATGG IGGGSNKKED IDGGNQRKQR RCWSPELHRR FLHALRQLGG  240
SHAATPKQIR ELMKVDGLTN DEVKSHLQKY RLHTRRPSPT IHNNSNQQAP QFVVVGGIWV  300
PPPEYAAVAA TTASAETSPI SAANGIYAPI AAAPPTVPQK PHHVQYEPLQ SEGGGSHSEG  360
GAHSNNSPAT SSSTHTTTT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-12218271255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-12218271255Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A1e-12218271154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-12218271154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-12218271154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-12218271154Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-12218271255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-12218271255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-12218271255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-12218271255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-12218271255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-12218271255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phosphate signaling in roots. {ECO:0000250|UniProtKB:Q9FX67}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00218DAPTransfer from AT1G68670Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G117500.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024462049.10.0transcription factor HHO2
SwissprotQ9FPE81e-106HHO3_ARATH; Transcription factor HHO3
TrEMBLA0A2I4KKV80.0A0A2I4KKV8_POPTR; G2-like family protein
STRINGPOPTR_0008s11630.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68670.12e-98G2-like family protein
Publications ? help Back to Top
  1. Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A
    Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis.
    Plant Cell Physiol., 2016. 57(6): p. 1142-52
    [PMID:27016098]