PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G086000.1
Common NamePOPTR_0008s08560g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ZF-HD
Protein Properties Length: 325aa    MW: 35570.5 Da    PI: 8.733
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G086000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer1001.7e-3156111357
         ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrev 57 
                          v Y+eClkNhAa  Gg a+DGCgEfmp+++++  ++++lkCaACgCHRnFHR e+
  Potri.008G086000.1  56 VVSYRECLKNHAAGFGGLALDGCGEFMPKPTTTpQDPTSLKCAACGCHRNFHRSEP 111
                         689****************************9999******************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257741.0E-1957111IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.6E-2657110IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.81959110IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.4E-2959110IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.79E-14181253IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.3E-25183253IPR009057Homeodomain-like
TIGRFAMsTIGR015652.9E-24191248IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MDLTSSPHHF TKSPDSDTDT ETPLQTHLTK ALSLTKGSCK TRQNHYFPPP PQQHTVVSYR  60
ECLKNHAAGF GGLALDGCGE FMPKPTTTPQ DPTSLKCAAC GCHRNFHRSE PFGPTTTTTT  120
RTPPPPALNW TTSPGPGSTS SGPSPSPASP IPQSFYPSAP HMLLALSAGH PDDTQPQKQS  180
HSLVMINPHG KKRGRTKFSQ EQKEKMYLFA EKLGWRMPRG INDRDVGEFC IEIGVDRNVF  240
KVWMHNNRSR KEKVSDSYGI NSSNKCGFNV NEEAAGRVIG TDNKGYSFDN DNNGSKHDSF  300
DRYQIESKVH VNGSMTPHGS STSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A6e-161922491874ZF-HD homeobox family protein
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, inflorescences, open flowers and seeds. Detected in stems and seedlings. {ECO:0000269|PubMed:16428600}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the up-regulation of several stress-inducible genes. Acts as a transcriptional activator by interacting with MED25 and NAC proteins. Involved in increased drought tolerance. {ECO:0000269|PubMed:16428600, ECO:0000269|PubMed:17233795}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G086000.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by abscisic acid and by drought and salt stress. Not induced by cold. {ECO:0000269|PubMed:17233795}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002312243.20.0zinc-finger homeodomain protein 11
SwissprotQ9SEZ15e-56ZHD11_ARATH; Zinc-finger homeodomain protein 11
TrEMBLB9HI660.0B9HI66_POPTR; Uncharacterized protein
STRINGPOPTR_0008s08560.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15210.13e-51homeobox protein 30
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]