PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G037800.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 1622aa    MW: 180459 Da    PI: 6.0584
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G037800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.001115301553223
                          EET..TTTEEESSHHHHHHHHHHT CS
             zf-C2H2    2 kCp..dCgksFsrksnLkrHirtH 23  
                          +C+   Cgk Fs++ +  +H+r+H
  Potri.008G037800.1 1530 RCTydGCGKKFSSHKYAIVHQRVH 1553
                          688889****************99 PP

2zf-C2H211.50.0009415891615123
                          EEET..TTTEEESSHHHHHHHHHH..T CS
             zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                          y+C+   Cg sF+  s++ rH r+  H
  Potri.008G037800.1 1589 YQCKvdGCGLSFRFVSDFSRHRRKtgH 1615
                          99*********************9777 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005451.1E-131555IPR003349JmjN domain
PROSITE profilePS5118313.551657IPR003349JmjN domain
PfamPF023755.0E-141750IPR003349JmjN domain
SuperFamilySSF511976.32E-26296462No hitNo description
SMARTSM005581.1E-45296465IPR003347JmjC domain
PROSITE profilePS5118434.045299465IPR003347JmjC domain
PfamPF023731.1E-35329448IPR003347JmjC domain
SMARTSM003551915061528IPR015880Zinc finger, C2H2-like
SMARTSM003550.07115291553IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.17515291558IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.7E-515301557IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.34E-615301566No hitNo description
PROSITE patternPS00028015311553IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.1E-1015581583IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.002715591583IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.59315591588IPR007087Zinc finger, C2H2
PROSITE patternPS00028015611583IPR007087Zinc finger, C2H2
SuperFamilySSF576671.23E-1015691611No hitNo description
Gene3DG3DSA:3.30.160.603.4E-1115841612IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.1915891615IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.4515891620IPR007087Zinc finger, C2H2
PROSITE patternPS00028015911615IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1622 aa     Download sequence    Send to blast
MGNVEIPKWL KGLPLAPEFR PTDTEFADPV AYISKIEKEA SAFGICKIIP PLPKPSKRYV  60
FSNLNRSLSK CPELGDDVDL SNVCSSSNGG LRDGGNDGEN RAVFTTRQQE LGQCVKKAKG  120
MVKENLQSGV HKQVWQSGEA YTLEQFESKS KAFARSLLGM LKEVNPLVIE ALFWKAASEK  180
PIYVEYANDV PGSGFGEPES HSRYFPRRRR KRASYQSYRR SRESPVCSTN DMDDVKNSHN  240
DEVKGVSIKN VPSLCLETTP RSSMASLTSF AEDNLMYSKQ KSVTATNDME GTAGWKLSNS  300
PWNLQVIARS PGSLTRFMPD DIPGVTSPMV YIGMLFSWFA WHVEDHELHS MNFLHTGSPK  360
TWYAVPGDYV FSFEEVIRTE AYGGNIDRLA ALSLLGEKTT LLSPKAIISS GIPCCRLVQN  420
PGEFVVTFPR AYHVGFSHGF NCGEAANFGT PQWLKVAKEA AVRRAAMNYL PMLSHQQLLY  480
LLTMSFVSRV PRSLLPGARS SRLRDRQREE RELSVKEAFL EDMLKENDIL SAFLEKNSTC  540
HAVIWNPDLL PCASKESHLL NITSTITTTP KQNASHNNFD VNRNCNENDL FKEMSLYMET  600
LDDLYMEEDD LSCDFQVDSG TLACVACGIL GFPFMSVLQP HEKASIELMP GEEPRVTRID  660
NVQPSLDSDS TGKGSVSDDH GPVKDYSVPL KDLPMPTGWN TSHKFLRPRI FCLEHGVQIE  720
ELLQSKGGAN LLIICHSDYQ KIKAHAYAIA EEIESPFNYN EVPLEAALKE DLNLINLAID  780
DEDHHECGED WTSKLGINLR YCVKIRKNSP SKKVQHALAL GGLFSDRSLT DFLNIKWQSR  840
RSRSRIKLNQ PFHPKPCKII EPDKDEMSGN KSDGLTVKKE EKLVQYTRRK YKVKIDYSTN  900
GLEGCSRRCF AEEVSGASGD DPDKYTEQTT VIYPCNIGIT RSGSAGFGFS PIEDPEMLHE  960
VKVLEAAGGL TLNSAPSQDA CSVLTATVAV KSVGGQIEDQ LLKESKNARN ICNVKASGTS  1020
EIEHQINASG GTSEKQDFYA TKCCSPFITV ANERFEMQRE DQVLGNVNMG ETCNMVSEGQ  1080
QRVLDDGDAS VDEVSDLANV ASLHVSPPPI GLRADVVVEN SFINNEVSPP VTLDDEVKKE  1140
LVTKNRTNGD QCSSSDDTLM NQPTTSLDER CGHEQETRAV QNKTQKEAEI KNGSNDEIVP  1200
SNVISVTNLV PIDESSEFHR ELHATVNLCN GMAFENGKQL VFQTTNDSNK ELISCSVAQM  1260
EINSSTASSE FSKLHRQAYA ENDLCSGSTL DTIVPPEIPT TDIRTVEELA SNSATINQEL  1320
SEASKEICAI QDSYACMDLE PEVEKEIHSS DGVTRDSEVQ KIHQGTSLIN EDIHVSARVI  1380
LVNQPPTPSP VIKCSNIDDK SCVGESMVTC NKFFSSQEIE SIESAVVDSR PTAGKGRKRK  1440
GEVEQLTENK FDSNGFIRSP CEGLRPRAGK DVGKSAEENP IPKRLKKPSN VSVSRSKRKE  1500
ITQRSYKCDL EGCRMRFETK AELQLHKGNR CTYDGCGKKF SSHKYAIVHQ RVHEDDRPLK  1560
CPWKGCTMSF KWAWARIEHI RVHTGEKPYQ CKVDGCGLSF RFVSDFSRHR RKTGHYLNTP  1620
D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A2e-56279479137346Transcription factor jumonji (Jmj) family protein
6ip4_A2e-56279479137346Arabidopsis JMJ13
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed at low levels in cotyledons and leaves. Detected in inflorescences, stems, roots and siliques but not in shoot apical meristems or root tips. {ECO:0000269|PubMed:15377760, ECO:0000269|PubMed:18713399}.
Functional Description ? help Back to Top
Source Description
UniProtActs probably as a histone 'Lys-4' (H3K4me) demethylase. Involved in transcriptional gene regulation. Acts as a repressor of the photoperiodic flowering pathway and of FT. Binds around the transcription start site of the FT locus. {ECO:0000269|PubMed:15377760, ECO:0000269|PubMed:18467490, ECO:0000269|PubMed:19946624}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G037800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002312010.30.0probable lysine-specific demethylase ELF6 isoform X2
SwissprotQ6BDA00.0ELF6_ARATH; Probable lysine-specific demethylase ELF6
TrEMBLA0A2K1ZB880.0A0A2K1ZB88_POPTR; Uncharacterized protein
STRINGPOPTR_0010s23160.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80313034
Representative plantOGRP75061114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.10.0C2H2 family protein
Publications ? help Back to Top
  1. Heidari B,Nemie-Feyissa D,Kangasjärvi S,Lillo C
    Antagonistic regulation of flowering time through distinct regulatory subunits of protein phosphatase 2A.
    PLoS ONE, 2013. 8(7): p. e67987
    [PMID:23976921]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Crevillén P, et al.
    Epigenetic reprogramming that prevents transgenerational inheritance of the vernalized state.
    Nature, 2014. 515(7528): p. 587-90
    [PMID:25219852]
  4. Yang H,Howard M,Dean C
    Physical coupling of activation and derepression activities to maintain an active transcriptional state at FLC.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(33): p. 9369-74
    [PMID:27482092]