PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.007G129000.1
Common NamePOPTR_0007s01920g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family FAR1
Protein Properties Length: 144aa    MW: 16343.7 Da    PI: 8.4789
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.007G129000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR190.42.5e-2848136290
                FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                         fY+eYAk+ GF +r+ +s+ks+++g+i++r++ C+keg++ +++k+ + + r+r+ +r gC a++ vk+ek gkw+vtk+  eHnH+l+
  Potri.007G129000.1  48 FYDEYAKQEGFLTRIVSSRKSEHDGTIISRRLACNKEGFNLSSQKTGQVKIRKRERKREGCMAMILVKREKLGKWVVTKFTREHNHPLV 136
                         9*********************************************999**************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.9E-2648136IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MEIETLVEDK IVTTESIVGG ETGVCEVDTS QEPYEGMVFE SENAARVFYD EYAKQEGFLT  60
RIVSSRKSEH DGTIISRRLA CNKEGFNLSS QKTGQVKIRK RERKREGCMA MILVKREKLG  120
KWVVTKFTRE HNHPLVISSK KVD*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.007G129000.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003632074.27e-82PREDICTED: protein FAR1-RELATED SEQUENCE 5
SwissprotQ9SZL84e-22FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A2K1ZTL21e-100A0A2K1ZTL2_POPTR; Uncharacterized protein
STRINGPOPTR_0007s01920.14e-99(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF96531104
Representative plantOGRP3376727
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43280.12e-40FAR1 family protein
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]