PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.007G128900.1
Common NamePOPTR_0007s01930g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family FAR1
Protein Properties Length: 249aa    MW: 28676 Da    PI: 5.3094
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.007G128900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR183.24.4e-2675166191
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                         +fY+ Y++++GF++r++++++s ++++i+ r+fvCskeg+r  ++ k +++  ++r+ tr gC+a+l++  ++ gkw+++ + +eHnH+l+
  Potri.007G128900.1  75 EFYELYGRRMGFTIRNNRTRRSLKDNSIIGREFVCSKEGFRGGKSPKgENRVFQSRPITREGCNAMLRIAAKDGGKWVIYGFIKEHNHDLN 165
                         6****************************************9877764667778***********************************97 PP

                FAR1  91 p 91 
                         p
  Potri.007G128900.1 166 P 166
                         5 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.3E-2375166IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MMASTSGEQF NSNRNYRCWL AETFDDQETA DDELAGNLDG NDNIIQQSIQ DFPVSLEPFE  60
PFIGMEFESA EDAREFYELY GRRMGFTIRN NRTRRSLKDN SIIGREFVCS KEGFRGGKSP  120
KGENRVFQSR PITREGCNAM LRIAAKDGGK WVIYGFIKEH NHDLNPSKIP PRRSHRIAFS  180
EDEKDLKIRE LSTELHREKK KSAAYQKQLQ MVLTYIEEHT QRLSLKAEVV ANKVKELESE  240
EPEDPDSD*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.123287e-75bud| catkin
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.007G128900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006380293.10.0protein FAR1-RELATED SEQUENCE 5
RefseqXP_024460694.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLU5G3X10.0U5G3X1_POPTR; Uncharacterized protein
STRINGPOPTR_0007s01930.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15811911
Representative plantOGRP8956514
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07500.11e-47FAR1 family protein