PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.007G128800.3
Common NamePOPTR_0007s01940g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family FAR1
Protein Properties Length: 192aa    MW: 21886.9 Da    PI: 7.4438
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.007G128800.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR176.55.1e-2476165190
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerr..traetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                         +fY +Y++ +GF+vr++++++s+ n++++ ++fvCskeg+r+++  + +++     + + tr gC a++++ ++  gkw+vtk+++eH+H+
  Potri.007G128800.3  76 EFYISYGRCTGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYVHrKDR--IlpPPPITREGCGAMIRLALK-GGKWVVTKFVKEHTHK 163
                         6******************************************98882233..244899***************.**************** PP

                FAR1  89 la 90 
                         l+
  Potri.007G128800.3 164 LM 165
                         97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.5E-2176165IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MDKQSVHGFD SNDSDLDLHG EAYECGRIED ELQNNLDFCV DEDDKTSVQC IELAVNTEGL  60
EPCEGMEFNS RDEAREFYIS YGRCTGFTVR IHHNRRSRVN NQVIGQDFVC SKEGFRAKKY  120
VHRKDRILPP PPITREGCGA MIRLALKGGK WVVTKFVKEH THKLMSPSKV PWRGSGKQLI  180
SEVCLRFKMA F*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.007G128800.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002309804.21e-136protein FAR1-RELATED SEQUENCE 5
TrEMBLB9HH491e-135B9HH49_POPTR; Uncharacterized protein
STRINGPOPTR_0007s01940.11e-135(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.23e-25FAR1 family protein