PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.007G128800.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family FAR1
Protein Properties Length: 218aa    MW: 24947.3 Da    PI: 7.9608
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.007G128800.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR176.16.9e-2476165190
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerr..traetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                         +fY +Y++ +GF+vr++++++s+ n++++ ++fvCskeg+r+++  + +++     + + tr gC a++++ ++  gkw+vtk+++eH+H+
  Potri.007G128800.2  76 EFYISYGRCTGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYVHrKDR--IlpPPPITREGCGAMIRLALK-GGKWVVTKFVKEHTHK 163
                         6******************************************98882233..244899***************.**************** PP

                FAR1  89 la 90 
                         l+
  Potri.007G128800.2 164 LM 165
                         97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.4E-2176165IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MDKQSVHGFD SNDSDLDLHG EAYECGRIED ELQNNLDFCV DEDDKTSVQC IELAVNTEGL  60
EPCEGMEFNS RDEAREFYIS YGRCTGFTVR IHHNRRSRVN NQVIGQDFVC SKEGFRAKKY  120
VHRKDRILPP PPITREGCGA MIRLALKGGK WVVTKFVKEH THKLMSPSKV PWRGSGKQLI  180
SEVCLRMRRI KESVNYHSSC IMRDKNVNEG VLYMKNS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.007G128800.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002309804.21e-136protein FAR1-RELATED SEQUENCE 5
TrEMBLB9HH491e-135B9HH49_POPTR; Uncharacterized protein
STRINGPOPTR_0007s01940.11e-135(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.24e-25FAR1 family protein