PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.007G128800.1
Common NamePOPTR_0007s01940g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family FAR1
Protein Properties Length: 254aa    MW: 29360.9 Da    PI: 6.0159
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.007G128800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR175.79.7e-2476165190
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerr..traetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                         +fY +Y++ +GF+vr++++++s+ n++++ ++fvCskeg+r+++  + +++     + + tr gC a++++ ++  gkw+vtk+++eH+H+
  Potri.007G128800.1  76 EFYISYGRCTGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYVHrKDR--IlpPPPITREGCGAMIRLALK-GGKWVVTKFVKEHTHK 163
                         6******************************************98882233..244899***************.**************** PP

                FAR1  89 la 90 
                         l+
  Potri.007G128800.1 164 LM 165
                         97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.7E-2176165IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MDKQSVHGFD SNDSDLDLHG EAYECGRIED ELQNNLDFCV DEDDKTSVQC IELAVNTEGL  60
EPCEGMEFNS RDEAREFYIS YGRCTGFTVR IHHNRRSRVN NQVIGQDFVC SKEGFRAKKY  120
VHRKDRILPP PPITREGCGA MIRLALKGGK WVVTKFVKEH THKLMSPSKV PWRGSGKQLI  180
SEDEKDKRIR ELSLELYNER QKCKRRCAVY EEQLNMILQD LEKHTEHVSK KVDDVVKSIR  240
EIEEEHSDDS NSE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.007G128800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002309804.20.0protein FAR1-RELATED SEQUENCE 5
TrEMBLB9HH490.0B9HH49_POPTR; Uncharacterized protein
STRINGPOPTR_0007s01940.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88613044
Representative plantOGRP8956514
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07500.12e-37FAR1 family protein