PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.007G128700.3
Common NamePOPTR_0007s01950g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family FAR1
Protein Properties Length: 249aa    MW: 28544.5 Da    PI: 5.6857
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.007G128700.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR184.61.6e-2680170190
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                         +fY eYAk++GF++r+++ ++s ++  ++ r+fvCs+eg+r+ +++  +++   +r++tr gCka++++  ++ gkw+vtk+++eHnH+l+
  Potri.007G128700.3  80 DFYYEYAKRTGFTIRTNRIRHSLKSMAVIGRDFVCSREGFRAAKHSLrKDRVLPPRPVTREGCKAMIRLAARDGGKWVVTKFVQEHNHKLM 170
                         6*****************************************9998823333449**********************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.8E-2480170IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MTSTTDGRSF LDIDEGSDEE MFESFGEHEA SQDGLLQQCI SQRVVDNGMI LTESSMENLS  60
VDGLEPYTGM TFPSLDDARD FYYEYAKRTG FTIRTNRIRH SLKSMAVIGR DFVCSREGFR  120
AAKHSLRKDR VLPPRPVTRE GCKAMIRLAA RDGGKWVVTK FVQEHNHKLM THCKFLGELP  180
TINILSEEEK DKKIQDLYGE LQRERERSAA FQQQLCMILK DLKEHEEFVS LRVEDIIKTL  240
KEIELGVL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.007G128700.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2146281e-112AC214628.1 Populus trichocarpa clone POP040-F15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002309805.10.0protein FAR1-RELATED SEQUENCE 5
RefseqXP_024461384.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLB9HH500.0B9HH50_POPTR; Uncharacterized protein
STRINGPOPTR_0007s01950.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07500.11e-41FAR1 family protein