PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.007G128700.1
Common NamePOPTR_0007s01950g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family FAR1
Protein Properties Length: 189aa    MW: 21358.2 Da    PI: 6.5117
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.007G128700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR185.58.4e-2780170190
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                         +fY eYAk++GF++r+++ ++s ++  ++ r+fvCs+eg+r+ +++  +++   +r++tr gCka++++  ++ gkw+vtk+++eHnH+l+
  Potri.007G128700.1  80 DFYYEYAKRTGFTIRTNRIRHSLKSMAVIGRDFVCSREGFRAAKHSLrKDRVLPPRPVTREGCKAMIRLAARDGGKWVVTKFVQEHNHKLM 170
                         6*****************************************9998823333449**********************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.5E-2480170IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MTSTTDGRSF LDIDEGSDEE MFESFGEHEA SQDGLLQQCI SQRVVDNGMI LTESSMENLS  60
VDGLEPYTGM TFPSLDDARD FYYEYAKRTG FTIRTNRIRH SLKSMAVIGR DFVCSREGFR  120
AAKHSLRKDR VLPPRPVTRE GCKAMIRLAA RDGGKWVVTK FVQEHNHKLM THCKFLGELP  180
TINILSEV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.007G128700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2146281e-112AC214628.1 Populus trichocarpa clone POP040-F15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002309805.11e-139protein FAR1-RELATED SEQUENCE 5
RefseqXP_024461384.11e-139protein FAR1-RELATED SEQUENCE 5
TrEMBLB9HH501e-138B9HH50_POPTR; Uncharacterized protein
STRINGPOPTR_0007s01950.11e-139(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.23e-30FAR1 family protein